barSeed - Barley Seed Development Database

Probe CUST_33173_PI390587928

Source Contig U35_7974

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33173_PI390587928	Hv_44K_v2	TCATGTGTATATCTCCATGCTTCCTTCCCTGTGGTGAAACAATGGCCGGTATACGAATTG	1199	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.873	2.022	1.106	0.767	0.299	0.339
Raw	3135.607	3499.500	1692.783	1882.161	254.542	314.341

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_848.2	1883	7e-23	1802 - 1861	98	59 / 60	plus	ABC17672
JLOC1	JLOC1_523.1	1894	4e-23	1803 - 1862	98	59 / 60	plus
Harvest21	ABC17672	1273	3e-25	1200 - 1259	100	60 / 60	plus	ABC17672
Harvest35	U35_7974	1273	3e-25	1200 - 1259	100	60 / 60	plus

Contig Sequence (1273 bp)

>U35_7974 1273 Hv_44K_v2
AATGCCGAGCGCCGTTGAGGGTCTATTGGGCCTTGGATTTGGCTTTGTGGAAGTTGGCTC
TGTAACACCTCAGCCTCAAGAGGGAAATCCCAAGCCTCGAATATTCAGATTAAAAGAGCA
TGGTGCTGTCATCAATCGCTGTGGGTTCAACAGTGAAGGAATTGTAGTAGTTGCTAAGCG
TCTTGGGGCACAACATGGTAAGAGGAAGATGGAGGAAACTTCGAGCTCCAGTGATGTAAA
GCAAGGAGGGAAAGCAGGTCCTGGAATTTTGGGAGTCAATCTTGGCAAGAATAAGACAAG
TGAAGATGCTGGTGCTGACTACGTGCAAGGAGTTCATTCTTTGTCACAGTATGCTGATTA
CCTGGTCATAAATGTTTCTTCCCCAAATACTCCTGGTCTTCGCCAATTGCAAGGTAGAAA
GCAGCTGAGAGAACTTGTGAAGAAGGTGCAAGATGCACGAGATGAGATGCAGTGGGCTGA
AGATGGTCCACCACCACTGCTTGTGAAGATCGCACCGGACTTGTCAAAGCAGGATCTAGA
AGACATTGCTGCGGTTGCTCTTTCTTCCAAGTTGGATGGCCTGATTATATCGAACACAAC
AATTTCTAGGCCTTCTCCTGCAGACGCACATCCACTAGCTCAGGAAGCTGGCGGATTAAG
TGGGAAGCCTCTGTTTGACTTATCTACGCAAGTTCTCAGGGATATGTATATCCGTACATC
TGGCAAGGTTACCCTGATAGGCTGTGGTGGTGTAACTAGCGGCGAGGACGCATACAAGAA
GATACGTTCTGGAGCCACGCTTGTCCAGCTTTACACTGCACTTGCCTACGGAGGTCCAGC
TCTCATCCCGAGAATAAAGGCCGAGCTCGCAGAATGCTTGGAAAGAGATGGCTTCAAGTC
TGTCCAGGAGGCAGTGGGGGCAGACTTCAAGCCCTTGAAAGCCTGAACACCAACTGATAT
CCTCGACGACGCTAGCAGAATTTTCCCATGAGCGTGCTTTTGCCCCACTCACTCACTCGG
ACGCTACTCGAAAAGCGAGCGAAACCAAGTCGAAACTATTTTGAGGATGTGTTACTAATC
ATATACAGCCTTTAGTAAGTACGTAGTGGTCTACGTGCCAGTGGTGTATCCATGGATGAT
GGCATCCGGTTCTTGTTTGCTTGTGAGCGAGTTGCACAAGGAGGAATTTTATAGTCAACT
CATGTGTATATCTCCATGCTTCCTTCCCTGTGGTGAAACAATGGCCGGTATACGAATTGC
GCGAAGGATATCT

Homology of Contig U35_7974 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g57950.1	470	0.0	protein\|dihydroorotate dihydrogenase protein, putative, expressed
Brachypodium v1_2	Bradi5g26080.1	471	0.0
Arabidopsis v10	AT5G23300.1	460	1e-160	\| Symbols: PYRD \| pyrimidine d \| chr5:7847792-7850243 REVERSE LENGTH=460