barSeed - Barley Seed Development Database

Probe CUST_33171_PI390587928

Source Contig U35_7976

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33171_PI390587928	Hv_44K_v2	GATACCATGTTTGATATGCTGTACTTCTGACTGTAAAATATAGTCCGGTTCTTGCCTAAA	567	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376294	2074	2e-23	1938 - 1995	100	58 / 58	plus	None
MLOC	MLOC_11494.2	2902	2e-23	1712 - 1769	100	58 / 58	plus	ABC05892 ABC05893
MLOC	MLOC_11494.1	2745	2e-23	1621 - 1678	100	58 / 58	plus	ABC05892 ABC05893 ABC12784
JLOC1	JLOC1_7616.1	1762	1e-23	1342 - 1399	100	58 / 58	plus
Harvest35	U35_7976	641	3e-25	568 - 627	100	60 / 60	plus

Contig Sequence (641 bp)

>U35_7976 641 Hv_44K_v2
TACCGGCTTGAGTTCAAGGCTTCTGATGCTAAAAGGAGTGTTAAATCAAAACTGGGCAGC
AGTTCACTCAACGAAATCCAGCAGCAAATGGTCAAGCTTAGTGCAAACAGTCCGGTGGAC
AGCAAGCGGGGTGCTAGGAGCAAGACAAAGGCTAGTCAAAAGGATACCACTGTGAACACA
TATCCAGCTCTCAAGGCCACCAATCAAGCGGGTGCTTCAAATGCTTATGAAACAGTGCCC
CTCAACATCCCCAACCAGGCCAATGCTTCCAATGCTTATCAAACAGTGGCTCCCAACATT
CCCAATCAGGACAGCACCTCAAATGCCTATGAAGATTCATCACAGGTGGACCCAATGTCA
TTTCTTAATGACAACGTCGTCTATGGACCTCATCTTCCATATGGTTACCCCGACGGAAAA
GGCGACTTCTACTGGAACCCCACTAGCGGCACCTGAAGATGCGATATGCCAAGCTCATGC
ACTCAGACAAATTGTAACACATCAACTAAAATTTGGGGCTCAACACTCTGGCCCTGCAGT
TTTTCTCAAGTGTAGGCATCTTGGATAGATACCATGTTTGATATGCTGTACTTCTGACTG
TAAAATATAGTCCGGTTCTTGCCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_7976 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g43950.1	642	4e-59	protein\|expressed protein
Brachypodium v1_2	Bradi2g19820.1	583	1e-59
Arabidopsis v10	None