barSeed - Barley Seed Development Database

Probe CUST_3316_PI390587928

Source Contig U35_4125

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3316_PI390587928	Hv_44K_v2	CTATATGTTTGTTCCTTGTTTGATTCCATTTGTATTTTCAGGACAAAAGCTGAACCAGCT	394	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.323	1.053	1.315	1.214	0.388	0.342
Raw	29.403	38.384	41.260	59.051	6.020	6.250

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14296.2	1154	2e-24	578 - 637	100	60 / 60	minus	None
Harvest21	ABC09261	1052	3e-25	395 - 454	100	60 / 60	plus
Harvest35	U35_4125	640	3e-25	395 - 454	100	60 / 60	plus

Contig Sequence (640 bp)

>U35_4125 640 Hv_44K_v2
TGGCACGCTAGAGAAATTTCAGCAAGAGAACAAAAAACTTTCCAACTCAGAGGCTTTTAT
GCGTAGATCAGAGGCTCAGCAGAAGGCTGATCAAAAGGCTCGTGAGGACAGTGAAAGATT
GCGGCAGCAAGTGCGGGAGCAAGCAGCTGAGAAGCGTAGGCGTGATATGACGCTTCGTGC
TCGAGTAGCTGCTAAGTCAGAAGAAAAGAGGTTGGAGCTATTGTACATTCAGTGGTCTGA
GCATCACAAAAAGCTGTCCAGTTTCTTAAGGTTATTTTTATTCCTGGTCCAAAAGTATCC
ATATTAACAATTAAATTGAGGGAAGATGCGTTTCTGATTGTACGCAAATCTTGATGTTTG
ATGTCTATAGGGGTTTCCATATCCACTCATTATACTATATGTTTGTTCCTTGTTTGATTC
CATTTGTATTTTCAGGACAAAAGCTGAACCAGCTATTTATTACATGCCGGCTAAACCAAT
AGTTGATGATCCGCTTATTGTTGAGCAAAACAAGGAAAAGGCATTTGAAGAATGGAAATC
TGTGCGCAGAACGGAGCTCACACAGTTTCAAAAGCAAGTTGAGGAGCAGTATCTGTCTAA
CGTTGAGAGGCAGCTGGAAAGAATTCAGAATGCCCGGAAT

Homology of Contig U35_4125 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None