barSeed - Barley Seed Development Database

Probe CUST_33157_PI390587928

Source Contig U35_38568

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33157_PI390587928	Hv_44K_v2	AGGTACATGCTTGACAGTGGCAAGGCTCTTGGCTTCCCTGATGGCCTGCTCATCAACGGT	617	GeneList: floralwhite MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.403	0.490	1.946	3.039	1.376	0.925
Raw	3.933	8.355	34.839	82.144	14.598	10.030

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373774	2034	2e-24	674 - 733	100	60 / 60	plus	ABC46743
MLOC	MLOC_66366.1	1460	2e-24	85 - 144	100	60 / 60	plus	ABC46743
JLOC1	JLOC1_43722.1	1519	8e-25	85 - 144	100	60 / 60	plus
Harvest35	U35_38568	689	3e-25	618 - 677	100	60 / 60	plus

Contig Sequence (689 bp)

>U35_38568 689 Hv_44K_v2
CAAGCCCCCCGCATCTCCTTTCCCACAGTTCCATTCTTCCATTGCTGCAAGAAAGCGCCT
AGATGGGCGCGGTTAGGAAGATGGCGATGGGTGGCAGCGCCGTTGCTCTCCTCTCCTTCC
TCATCGGCCTCCCGCTCCTCTCCGTCCTCGTCGCCGGCGAGGACCCGTACCGGTTCTTCA
CGTGGAACGTGAGCTACGGCGACATCTACCCGCTGGGCGTCAAGCAGCAGGGAATACTGA
TCAATGGCCAGTTCCCGGGGCCGCAGATAGACGCCGTCACCAACGATAACCTCGTCGTCA
ATGTCTTCAACAAGCTCAACGAGCCATTCCTCCTCTCCTGGAGCGGGGTGCAGCAGCGGC
GGAACTCGTTCGAGGACGGCGTGGCCGGCACGACGTGCCCGATACCGGCGGGCGCCAACT
TCACCTACATCCTGCAGGTCAAGGACCAGATCGGCACCTACTTCTACTTCCCCTCCCTCG
CCTTCCACAAGGCCGCCGGCGGCTTCGGCGCCATCCGCGTCCTCAGCCGCCCCAGGATCC
CCGTCCCCTTCCCTCCCCCAGCCGNCGACTACACCGCCCTCATCGGCGACTGGTACAAGG
CCAACCATACCGATTTGAGGTACATGCTTGACAGTGGCAAGGCTCTTGGCTTCCCTGATG
GCCTGCTCATCAACGGTCGCGGCTGGAAC

Homology of Contig U35_38568 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g32660.1	547	2e-105	protein\|monocopper oxidase, putative, expressed
Brachypodium v1_2	Bradi1g26470.1	544	2e-109
Arabidopsis v10	AT1G76160.1	541	2e-89	\| Symbols: sks5 \| SKU5 similar 5 \| chr1:28578211-28581020 REVERSE LENGTH=541