barSeed - Barley Seed Development Database

Probe CUST_33140_PI390587928

Source Contig U35_38573

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33140_PI390587928	Hv_44K_v2	TGTTGGCTACACTGAGGGAGGTCAACTAACAGAAGCAGTTGATTTCAAGAACACACTGTT	170	GeneList: skyblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.533	0.742	2.062	2.512	0.921	0.731
Raw	186.928	413.766	975.531	1878.985	245.144	211.897

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_38573	727	3e-25	171 - 230	100	60 / 60	plus

Contig Sequence (727 bp)

>U35_38573 727 Hv_44K_v2
CCCATTGCTAGCTTCATATTCTCTGGACCAACTGGTGTTGGTAAATCAGAATTAGCAAAG
GCTCTGGCATCCTACTACTTCGGCTCAGAGGAAGCCATGATCAGATTAGATATGAGTGAA
TTCATGGAGAGACATACAGTGTCCAAACTTATCGGATCACCTCCAGGTTATGTTGGCTAC
ACTGAGGGAGGTCAACTAACAGAAGCAGTTGATTTCAAGAACACACTGTTGATCATGACA
TCGAATGTCGGAAGCAGTGTCATCGAGAAGGGAGGCCGGAAGATTGGGTTTGACCTTGAC
TCTGATGAGAAAGATACCAGCTATAACAGGATCAAGAGCTTGGTGACCGAGGAGTTGAAG
CAGTATTTCAGGCCTGAGTTCTTGAACAGATTGGATGAGATGATTGTGTTCAGGCAGCTG
ACTAAGTTGGAGGTGAAAGAGATAGCTGATATTATGCTCAAAGAGGTGTTTGACAGGCTC
AAGGCAAAGGAAATAGACCTCCAGGTAACAGAGAAGTTCCGGGATAGAGTTGTCGACGAG
GGTTACAACCCAAGCTATGGTGCCAGGCCTCTGCGACGGGCTATTATGAGGCTTTTGGAA
GACAGCCTCGCGGAGAAGATGCTGGCTGGCGAGGTCAAGGAAGGTGATTCTGCTATTGTT
GATGTGGATTCAGATGGTAAGGTGGTGGTTCTCAACAGTGGGAGTGGTATTGCAGAGCCG
CTGGCGC

Homology of Contig U35_38573 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g32560.1	919	4e-147	protein\|ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi3g44340.3	922	7e-148
Arabidopsis v10	AT5G50920.1	929	7e-136	\| Symbols: CLPC, ATHSP93-V, HSP93-V, DCA1, CLPC1 \| CLPC homologue 1 \| chr5:20715710-20719800 REVERSE LENGTH=929