- Probe CUST_33139_PI390587928
- Source Contig U35_38575
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_33139_PI390587928 | Hv_44K_v2 | AGTAGAACATATTCCTCAAGGGGCACACTTTGTATGCTATGCAACGGTGAGCCGAAAAAA | 11 | GeneList: green MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 1.254 | 1.271 | 1.202 | 0.901 | 0.369 | 0.402 |
Raw | 450.770 | 717.854 | 595.363 | 709.605 | 102.286 | 119.864 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_73707.1 | 1208 | 9e-22 | 227 - 281 | 100 | 55 / 55 | plus | None |
JLOC1 | JLOC1_49076.1 | 1136 | 5e-22 | 226 - 280 | 100 | 55 / 55 | plus | |
Harvest35 | U35_38575 | 291 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus |
Contig Sequence (291 bp)
>U35_38575 291 Hv_44K_v2 TTTTTTTTTTTTTTTTTCGGCTCACCGTTGCATAGCATACAAAGTGTGCCCCTTGAGGAA TATGTTCTACTAGTTACTCCCTCGGTACCAAAATATAGGTCGCTGCGAGTATAATTCCGA CCAGGTGAAAATGAGGTAATTGACTTTTATGCCTCTAATACAAATTTTGAATTAGCGTCG CTACAGTAATTCCAACAGAAAGAGCATCTTATTCCGCGCGTCTTCCACCTCCGCCTGCAC CCCCGACCTCGACCTCCGCCTTCACCCCCGCCCTCCACCTCCGGCCTCCAC
Homology of Contig U35_38575 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |