barSeed - Barley Seed Development Database

Probe CUST_33138_PI390587928

Source Contig U35_38576

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33138_PI390587928	Hv_44K_v2	TTTATCAAAGCATTGGTGGCTAGATCTAAAGCTGATGTGCTTCATGAGCACTTGAAGGGA	595	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.183	1.377	1.140	0.645	0.501	0.378
Raw	333.366	294.754	236.444	190.607	56.601	48.043

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13417.2	3821	2e-24	2453 - 2512	100	60 / 60	plus	None
MLOC	MLOC_13417.1	3873	2e-24	2584 - 2643	100	60 / 60	plus	None
JLOC1	JLOC1_9083.1	3830	8e-25	2488 - 2547	100	60 / 60	plus
Harvest35	U35_38576	655	3e-25	596 - 655	100	60 / 60	plus

Contig Sequence (655 bp)

>U35_38576 655 Hv_44K_v2
TGCAAAGTCTATCAATGTGCTATTCAGTTATGTATAACCTGCAATTAAGGATAGCGACTC
AATGAATCAAAAGAGAGCATACAAGGTCCTCTCAATGTTACTTAAGGACGCTGAATTTAT
TGAGAGGAATTTAGATGTCCTGTTTGAATTGATGATTTCGTCGTTGCCATGCCAATTTCC
ATCGAAGCGGTACAGGCTTGAATGCCTGCATCACCTTATTGTTTACATTTTGAAGGATCC
ATCTAAGCTTAGGAAGAGGGAAATTGTTAGTTCATTTCTCACTGAAATACTTCTTGCCTT
GAAGGAGGCTAACAAGAAAACCAGGAATAGAGCTTATGATGTGCTTATTGAAATCGGACG
CGCTTGTGAAGATGGTGAAAATGATGGGAGGAAGGACAGCTTGCACCAGTTCTTTGACAT
GGTAGCTGGTGGTCTAGCTGGTCAAACTCCACATGCGATCAGTGCCGCTGTGACTGGGTT
AGCTCGCTTGACCTATGAGTTCTCAGATCTTATTGGAGTAGCGTACAAGCTCCTCCCATC
GACTTTTCTTCTTATGCAGAGGAACAATCGAGAACTTGTCACAGCCAACTTAGGCTTTAT
CAAAGCATTGGTGGCTAGATCTAAAGCTGATGTGCTTCATGAGCACTTGAAGGGA

Homology of Contig U35_38576 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g54110.1	1273	2e-123	protein\|expressed protein
Brachypodium v1_2	Bradi3g60080.1	1272	4e-130
Arabidopsis v10	AT2G34357.1	1280	1e-66	ARM repeat superfamily protein \| chr2:14499236-14505555 FORWARD LENGTH=1280