- Probe CUST_33137_PI390587928
- Source Contig U35_38577
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_33137_PI390587928 | Hv_44K_v2 | AAAGTCCTCTTGTTATCTTTGATGATGTTGCTGACATTGACAAAGCTGTTGAATGGGCCA | 630 | GeneList: skyblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.341 | 0.646 | 2.163 | 2.244 | 0.950 | 0.830 |
| Raw | 63.781 | 180.519 | 549.182 | 917.894 | 131.671 | 128.799 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK365132 | 1951 | 2e-24 | 928 - 987 | 100 | 60 / 60 | plus | ABC07094 |
| MLOC | MLOC_66224.2 | 1059 | 2e-24 | 158 - 217 | 100 | 60 / 60 | plus | ABC07094 |
| MLOC | MLOC_66224.1 | 2285 | 2e-24 | 1384 - 1443 | 100 | 60 / 60 | plus | ABC07094 |
| JLOC1 | JLOC1_43621.1 | 2126 | 8e-25 | 1067 - 1126 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC07094 | 2003 | 3e-25 | 959 - 1018 | 100 | 60 / 60 | plus | ABC07094 |
| Harvest35 | U35_38577 | 690 | 3e-25 | 631 - 690 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_2180 | 2010 | 3e-25 | 959 - 1018 | 100 | 60 / 60 | plus |
Contig Sequence (690 bp)
>U35_38577 690 Hv_44K_v2 CACGCGTCCGCGCGAGATTGGATCTGAGCTCTCTCGTTCTGGTTCCTCCATCCTCACGGT GTCATGACGGCGTCTCAGGTTATTCCGCCCCGCGTGCTCCTCGCCGCTCCGCCCCGACCG GCTCCTTGTTGCTCTTCCATCTTCCCCTTTCTTCTATCTTTTCTTTCCTCCACACCCCGT TCCCCGCCCTGCTCGGCCGCTGTCGCCCGGCTACTCTCACTGCGGGTGCCACTCGATCCC CGTCGTGGGTACGCGGAAGCCGCAACCCCTGCTCACGTTCTCGCTTGCCGTCCTGGGACT GCGTGGAGCGGTGGAGGCCGCGCATCCTGACTGCATGCCTGCCTACTTGGAAGGTTGCAC CTGCCCTGGCTGCTGGGTGTACAGCTGTGTTAAAACCATCTGAGCTGGCATCTCTAACTT GCTTAGAGCTCGGCGCAATATGTGAAGAGATAGGACTGCCTTCAGGAGTTCTGAACATAA TTACTGGTCTGGGCCCTGACGCAGGTGCTCCAATAGCTTCACATCCCCATGTGGATAAGA TCGCTTTTACAGGAAGTACTGCAACTGGTAAGACGATNATGACCGCTGCTGCTCAAATGG TTTAGCCTGTNTCATTAGAGCTTGGTGGCAAAAGTCCTCTTGTTATCTTTGATGATGTTG CTGACATTGACAAAGCTGTTGAATGGGCCA
Homology of Contig U35_38577 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os04g39020.1 | 506 | 2e-53 | protein|aldehyde dehydrogenase, putative, expressed |
| Brachypodium v1_2 | Bradi5g12617.1 | 507 | 4e-60 | |
| Arabidopsis v10 | None |