- Probe CUST_33126_PI390587928
- Source Contig U35_38583
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_33126_PI390587928 | Hv_44K_v2 | AGCTCTTTATCATTGTTTCTGGATCCCCTTGTCCCAGAGAGATTTTATTGTGCACATGGC | 255 | GeneList: darkorange MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.780 | 1.263 | 2.301 | 1.832 | 0.834 | 0.742 |
| Raw | 5.790 | 15.797 | 26.225 | 33.909 | 3.523 | 3.360 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK370007 | 2889 | 2e-24 | 1614 - 1673 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_68641.2 | 2496 | 2e-24 | 1230 - 1289 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_68641.1 | 2767 | 2e-24 | 1305 - 1364 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_45425.1 | 2891 | 8e-25 | 1416 - 1475 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_38583 | 421 | 3e-25 | 256 - 315 | 100 | 60 / 60 | plus |
Contig Sequence (421 bp)
>U35_38583 421 Hv_44K_v2 AAAACAATGAACTCGAAGGCAAGAGCAGCTCTTGTGAAGGTAAAGCTGTGGGTTTTGTGT ACAGCTCTGTTGGCAAAGATTCAGTTCTTGTAACTGCCTGGGGTAGTGGACAGCTCCAGA TTGATGCTCTAGCCGATGAAATCCAGTATGGGGTCAAATGTGAAGAGCAATACAGAAGCT GTCTGGATGGGACATTCTCCTCCTTTGCTAAGACTCTCAATTGTGGATTTGGCATTACCA AAAACTTCTAACGGTAGCTCTTTATCATTGTTTCTGGATCCCCTTGTCCCAGAGAGATTT TATTGTGCACATGGCGGGGGACTTGACATGGTCACGTTGCACTTCCTGCCGTTTTCATAC CCTGAAATGGCCTCCACACCACCCTCGGTGCATCCTGTACTCACCACNAGGCACAGTGAT A
Homology of Contig U35_38583 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os04g51900.1 | 773 | 5e-51 | protein|expressed protein |
| Brachypodium v1_2 | Bradi5g21070.2 | 854 | 3e-53 | |
| Arabidopsis v10 | None |