barSeed - Barley Seed Development Database

Probe CUST_33125_PI390587928

Source Contig U35_38584

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33125_PI390587928	Hv_44K_v2	GACAGGTGTATTTTTGGATTAGATTAGAAGATGTGAAGCCTGACAGTACTGTTTTATTGT	23	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.274	1.783	1.285	0.814	0.425	0.450
Raw	1406.497	2999.642	1927.887	1863.664	347.292	404.780

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68641.1	2767	7e-23	2532 - 2588	100	57 / 57	plus	None
JLOC1	JLOC1_45425.1	2891	4e-23	2643 - 2699	100	57 / 57	plus
Harvest35	U35_38584	432	3e-25	24 - 83	100	60 / 60	minus

Contig Sequence (432 bp)

>U35_38584 432 Hv_44K_v2
TTTTTTTTTTTTTTTTTAGCAAAACAATAAAACAGTACTGTCAGGCTTCACATCTTCTAA
TCTAATCCAAAAATACACCTGTCAATTGTGCCAAAATTACTGATTAAACATAGGGTCAAC
TACTTTCTCAACAATCTTGGCGCCATGGGCATAATTCACACCCCCAACAACCTACGAGCA
CGACACGAACCGAAAGGAGCGAGCCTTCCATAGTTTTTGAGCCAACATCTGCCAGCAATT
CCCTTTGGGTGCGATTCAAAACCAAGTATCACCGACCACGGTACTACTGCTGTTCCTTGT
TCTTGAGCTCAGTCTCGATAACCCGTAGCTTCTGATTGTTCTCCTCGTTGAGGAGCGACA
GCCTCTCGAGCGAAGACTTCATCAGCAACATCTGGGACTCCGAAACGTGGCCTCTCCCAG
CCTTCGGCGCCT

Homology of Contig U35_38584 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None