- Probe CUST_33117_PI390587928
- Source Contig U35_38595
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_33117_PI390587928 | Hv_44K_v2 | AAACGGGAACAAACTTATTTGCCAAAGTACTGCAAGAGCTCGTTGTCCAGGGTTCATCTG | 364 | GeneList: lightcyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.920 | 1.183 | 1.516 | 1.291 | 0.584 | 0.544 |
| Raw | 100.455 | 193.286 | 224.919 | 290.756 | 46.986 | 49.145 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK361539 | 881 | 2e-24 | 577 - 636 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_25142.2 | 1332 | 2e-24 | 418 - 477 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_17224.1 | 1350 | 8e-25 | 423 - 482 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_38595 | 474 | 3e-25 | 365 - 424 | 100 | 60 / 60 | plus |
Contig Sequence (474 bp)
>U35_38595 474 Hv_44K_v2 CCGCCGTATCCCTAGGACGCTCTCACCTAATCGAGACAACATTGTTTGTCATCGGGGAGG GAGCCCCGCCGTCCCTCCGACACCCCCACCCCCGCCCCGCCCTCTTCGTGGCCGCCGGCA GCGCTCCCTCGTCGCGCTCGCTGCCCCGTCCACCATTCGCCTCCCCGATGTCGGACCTCA CCGTCCACATCCTGCTGCCATCGGCGGCTGACCGTCCCTTGTTCCGCATCCTGAACGGAA ACAAGTGAAGCTGTGATGATTGGCGAGATTGGGTCAAAGCACACTGTGTTTATACCCGAC ATGATGCCCTCTCTGTTGGATCTTCTGAATGATGAGATGCCCGCGGCCGCGAGACAGGCT GTTAAAACGGGAACAAACTTATTTGCCAAAGTACTGCAAGAGCTCGTTGTCCAGGGTTCA TCTGGTCCTCCGATGACAGGCTGCTGTCTGAATCTAGACACCTGGCCCTTCGTC
Homology of Contig U35_38595 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |