barSeed - Barley Seed Development Database

Probe CUST_33114_PI390587928

Source Contig U35_38598

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33114_PI390587928	Hv_44K_v2	CTGTCGCTCGACCTCGACCTGGAGATGGACGACATCGGGAGGTCGTCACATCCGTCCTTA	586	GeneList: mediumpurple3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	9.888	9.224	1.963	0.199	0.104	0.090
Raw	725.228	1040.528	184.195	30.782	3.890	2.983

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370771	3134	2e-24	576 - 635	100	60 / 60	plus	ABC09205 ABC18140 ABC29412
MLOC	MLOC_24703.1	383	2e-24	111 - 170	100	60 / 60	minus	None
JLOC1	JLOC1_16960.1	376	8e-25	106 - 165	100	60 / 60	minus
Harvest35	U35_38598	646	3e-25	587 - 646	100	60 / 60	plus

Contig Sequence (646 bp)

>U35_38598 646 Hv_44K_v2
GAGCGGTTGATTTTCGCCGAGTTATCGCGGAAGCGGTGAAAGGGAGGAAGGAGCGAGCGT
CTCGTGTGCGTGTGCGTGTGTCTGTGGTGCGTGTTGGTCGGCGGCGATGGACCAGGTGCA
GCGGAAGAGCAGCCTGAGGTCGCTGTCCATGTCGGACGAGCAGGCCATGGCGCCCGGCCT
CGGCGAGCGGCGGGAGGTGGTGCTCAAGATCGACGGCAACGGCAACGGCAACGGCCCCGC
GCCCTTCTCCGTCCCCGGCGCCGACGTCGGCGGGGCGGCTGGGAATGCCGGCGCCAAGCC
GACGGCGGGCAGGACGCTGTCGACCGCCGCCAGCTCGCCGACCAAGGGGTGGGACGACGG
GAGCTACGACTTCTGGAAGAACGAGGGCGGCGGGAAAGGGGGAGCCCCCGCGCCCCGCGT
CGAGGACTTCAGCTTCAAGAACCGGCCGGCGCAGCCGCCGCCGTCGTCGCAGGCGTCGTC
CCCTTCGCTCTCGCCGAAGCAGCCGGTGGTGGACGCCGCCGCCGAGGACCCGCCCACGCG
CCTCATCGGGAACTTCCTCCGGAAGCAGAAGGCGGCCGGGGCCGAGCTGTCGCTCGACCT
CGACCTGGAGATGGACGACATCGGGAGGTCGTCACATCCGTCCTTA

Homology of Contig U35_38598 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None