barSeed - Barley Seed Development Database

Probe CUST_33108_PI390587928

Source Contig U35_9504

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33108_PI390587928	Hv_44K_v2	TCTCTCTCGTGCTCCATAGCCTCCCCTGCTTCACTTCGTGTACAGACTGCAGACCGGCCG	108	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70904.1	2935	2e-24	2709 - 2768	100	60 / 60	minus	None
MLOC	MLOC_70904.2	2800	2e-24	2600 - 2659	100	60 / 60	minus	None
JLOC1	JLOC1_47077.1	2830	8e-25	176 - 235	100	60 / 60	plus
Harvest35	U35_9504	526	3e-25	109 - 168	100	60 / 60	plus

Contig Sequence (526 bp)

>U35_9504 526 Hv_44K_v2
ATAGCTCGCGGGCGCGCCACATTTATGACACCACCACCCCTCACACCCTACCTTACCTAC
CAACGAGCCCACCCCCTCCCTCACTCCTCTCCCCTCGCCACCGCAACGTCTCTCTCGTGC
TCCATAGCCTCCCCTGCTTCACTTCGTGTACAGACTGCAGACCGGCCGGCGCCATGCCGC
TGCGGCTAGGCGGTAACCGCGCGGCCGCCCTGCTGCTCGTCCTGCACTGCTGCTGCGCTC
CGCTGCTCTTCCCGTCGCCGGCAGCCGCCGCCGCCCACCGCCACCATCCCGCCGGGGACG
GCGTCGTGATCAGCGAGGCGGACCGGCAGGGCCTGCAGGCCATCAAGCAGGACCTCTCCG
ACCCCCGCGGCTTCCTCCGCTCCTGGAACGACACCGGCCTCGGCGGCGCCTGCTCGGGGG
CCTGGACGGGGATCAAGTGCGTCAACGGCAACGTGGTCGCCATCACGCTCCCCTGGCGCG
GCCTCGCTGGCACCCTCTCCGCGCGGNGGCTCGGCCAGCTCACCCA

Homology of Contig U35_9504 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None