barSeed - Barley Seed Development Database

Probe CUST_33102_PI390587928

Source Contig U35_9511

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33102_PI390587928	Hv_44K_v2	CTTCCTCTTGATCCTTTTGTAAAGTTGTTTTGCTGCGTTGATATATTTGCCTTGTGCCGT	1201	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	13.281	5.896	1.129	0.577	0.942	0.839
Raw	93.204	66.104	11.226	7.196	2.875	2.850

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_33439.1	2312	7e-23	2146 - 2205	98	59 / 60	plus	ABC22985
JLOC1	JLOC1_21668.1	2183	4e-23	2050 - 2109	98	59 / 60	plus
Harvest21	ABC22985	795	3e-25	1 - 60	100	60 / 60	minus	ABC22985
Harvest35	U35_9511	1261	3e-25	1202 - 1261	100	60 / 60	plus

Contig Sequence (1261 bp)

>U35_9511 1261 Hv_44K_v2
CTGCTCATCATCGTCGACGTGCTCGTCGTCGTCGCAGGAGACGGTCGGCGGCAGACCGTC
GTCCGCCGCCAAGACGCCGGAGTCGGTGAAGCCGTCATGCCTGAGCGGCGGCAGGGAGTG
GTGGTTCGACGACGTGGCGTCGCTGTCCCCGCCGACCCTCGAGAAGGCCATGAAGGTGCT
CGGCTGCCACGGCGCCGACAACAAGAACCTGACGCTGACGCGGTTCCTGCTGCACTACCT
CCGTCTGCACCGCCACGCTCCGCAAGGCCAACGACTCGGGCGGCAGCATCCTCGCCGGTC
TCGCCGACACGGCCGTGCACGGCGTGGCGCTGGCCGGCGGCGGCGGGGCGTTCTCCTGCC
GTGGCCTGTTCTCGGCTCTGCGGACCGTGTCGGCGGCGGGGCTGAGCAGGGAGTGCCGGC
GCAAGCTGGAGACGCTGGTGGGGCGGATGCTGGACCAGGCCACGCTCGACGACCTCCTCG
TGTCCGGCGACGGAGGCGGCGTGTACGACGTGAGCCTGGTCATGCGGCTCGTCAGGGTGT
TCGTGAGCTCCGTCGAGGAGGCTGGCTCGCCGTCGTCGTCGCAGAGGATGAGGAAGGCGG
GGAGGCTGGTGGACAAGTACCTGGCGGAGATCTCGCCGGACCAGGGGCTGCGGGTGTCCC
GGTTCCTCGCCGTCGCCGAGAGCCTGCCGGACTCCGCCAGGGACTGCTACGACGGCGTGT
ACAGAGCACTGGACATCTACCTCGAGTCTCATGCCGAGCTGACCGTCGAGGAGCGCGCGA
CACTATGCCGATGCCTCAACTACGAGAAGCTGACCCTCGAGGCGTGCAAGGACCTGGCGA
GGAACAGACTGATCCCGCCGAGGATCGCCGTGCAAGCATTGTCCTTGCAGCGGCCACCCG
ATGCACTCAAGAACCCCTTGTCATCGCCCACACCGAAGCGGGTCGTGCCGGATGACGAGA
AGGAGAAGGAGGTCCTGAGGCTGAACCTACGACGGATGCAGGGCCGTGTGGCGGAACTGG
AGATGGTGTGCAAAGAGATGAGAGGACAAATGAAGTTGTCGCCCCGGGCTGCGGCCAAGG
GCAACAAGGCCTTGGCTGGGAGGGGCTTGCCTTGGATGTGCTAGTAGCTTTCATAATGGG
AAAAAATGGGGGCATGATTTTTGTTTTGTGGGGTGAGGCTGTCATGCAGTTTGACCCTTT
TCTTCCTCTTGATCCTTTTGTAAAGTTGTTTTGCTGCGTTGATATATTTGCCTTGTGCCG
T

Homology of Contig U35_9511 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g57800.1	567	1e-91	protein\|BTBN13 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed
Brachypodium v1_2	None
Arabidopsis v10	AT1G50280.1	525	2e-51	Phototropic-responsive NPH3 family protein \| chr1:18623857-18626292 REVERSE LENGTH=525