barSeed - Barley Seed Development Database

Probe CUST_33096_PI390587928

Source Contig U35_9518

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33096_PI390587928	Hv_44K_v2	CAAAATTGACAGTACAGAGGATCTGTTGTATTTAGCACATGCTTCCTTGATGAATTGTTA	798	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.867	1.206	1.768	1.627	0.612	0.442
Raw	717.857	1568.173	1987.243	2839.720	381.752	295.251

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70743.1	2002	2e-24	1457 - 1516	100	60 / 60	plus	None
JLOC1	JLOC1_46962.1	1713	8e-25	1460 - 1519	100	60 / 60	plus
Harvest35	U35_9518	862	3e-25	799 - 858	100	60 / 60	plus

Contig Sequence (862 bp)

>U35_9518 862 Hv_44K_v2
GTCGGCGGCGGAACTCAAGGAGATAGCGCACGGGCTCGACAACTCCGGCCACCGCTTCCT
GTGGGTCGTGCGTACCCCTCCGGTTGACCCGGCCAAATTCTTCCTGCCGCGTCCGGAGCC
AGACCTGGATGCGCTCCTCCCCGATGGGTTCATGGAGAGGACACGAGATAGGGGGATGGT
GCTGAAGATGTGGGCGCCGCAGGTGGAGGTGCTGCGGCACGCTGCCACCGGCGCCTTCGT
GACACACTGCGGTTGGAACTCTGTCCTGGAAGCCGCGTCGGCCGGCGTGCCGATGCTCTG
CTGGCCGCAGTATGCAGAGCAGAGGCTCAACAAGGTGTTTGTGGTCGACGAGATGAAGTT
CGGAGTGGTGATGGAGGGATATGATGAGGAGCTGGTGAAGGCTGAAGAGGTGGAGAAGAA
GGTGAGGCTGGTGATGGAGTCAGAGGAAGGGGACAAGCTGAGAGAGAGGCTGACATTGGC
CAAGGAGAAGGCTGCTGAAGCACTGGCACACAGCGGGCCGTCACGGATGGCGTTTGCTGA
GTTCTTGAAGGATTCGAAGCTTTCGACATGATCAAGCACACAAGATAGCAACGGGATTGG
TCTTGGAATGTGTGATTCTAATGGTTTGCATCAATTCCCACTTTGAATCGCGAACTTGCC
CTTGTGGTGTTAAGAGGATGCGGTGAAAGTTATTTGAGGCATAATAGCTGCTTTAGCAAT
ATACTATTGAAATGATATGTGGTAGCTCTGTGCTTCTGAATTCCAGTCTGAAGCTTTCCT
CAGTTACTATGTTGTATTCAAAATTGACAGTACAGAGGATCTGTTGTATTTAGCACATGC
TTCCTTGATGAATTGTTATGGA

Homology of Contig U35_9518 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g45080.1	481	6e-81	protein\|anthocyanidin 5,3-O-glucosyltransferase, putative, expressed
Brachypodium v1_2	Bradi2g19177.1	475	1e-87
Arabidopsis v10	None