- Probe CUST_33095_PI390587928
- Source Contig U35_9519
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_33095_PI390587928 | Hv_44K_v2 | CCTGAGTTGTTATGTACTCCCTTCGTTTCTAAATACTCCTATAAATCCTTTTTAGAGGTT | 397 | GeneList: bisque4 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.469 | 4.611 | 3.286 | 0.894 | 0.233 | 0.296 |
| Raw | 57.923 | 279.420 | 169.475 | 71.217 | 5.496 | 8.792 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK375510 | 3651 | 2e-24 | 3526 - 3585 | 100 | 60 / 60 | plus | ABC38833 |
| JLOC1 | JLOC1_46546.1 | 2949 | 8e-25 | 2778 - 2837 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC38833 | 540 | 3e-25 | 84 - 143 | 100 | 60 / 60 | minus | ABC38833 |
| Harvest35 | U35_9519 | 540 | 3e-25 | 398 - 457 | 100 | 60 / 60 | plus |
Contig Sequence (540 bp)
>U35_9519 540 Hv_44K_v2 CGAACCACCGCGTCGACGAGTTCATCTGGCAGGAGGTGACGCTGCTCAAGGCGACGCTGC TGGAGACGAGGGCGAAGCTGCTGCTCCGGGGCGGGCTGTTCGACACCGGCGAGGAGCTGT GCCGGACCTGCATCAGCATCCGGACCGTGATGCTCGGGCACGGCGACGCCCAGACGGTGG CCGCCCAGGAGACGCTGGCGAAGCTGGTCAGATACAGGAGCAAGGTATGAGGTGACGCCC AAAGCCCCTGCGAGCTCTTTTGATGCGCAAGCCCTTATTAGAAGGGTTTTCAAGGAATTT TCATGTCTCGCGGTTTCTGAAGCTCTGCTGTGATGCCAGCCACAGTTTTGTCAGTGATCT GTGCCATAGCCAAGCTTCGTGATGACGCCACGTGTAACCTGAGTTGTTATGTACTCCCTT CGTTTCTAAATACTCCTATAAATCCTTTTTAGAGGTTTTATAAAAGACTATGTAGGGATC TATGTAAACATATTTTAGAATATAGATTTACTCATTTTGCTCCAAAAAAAAAAAAAAAAA
Homology of Contig U35_9519 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |