- Probe CUST_33092_PI390587928
- Source Contig U35_9524
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_33092_PI390587928 | Hv_44K_v2 | ATGCGCTGTTCTGTTTGATTTAGATGGAATAAAATGTTCCTTTAGAATCTGATTAGTGGC | 390 | GeneList: darkolivegreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.067 | 0.176 | 0.866 | 1.987 | 1.981 | 3.063 |
| Raw | 209.240 | 893.828 | 3726.340 | 11583.017 | 4772.300 | 7964.043 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_22498.1 | 521 | 8e-25 | 405 - 464 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC18846 | 481 | 3e-25 | 391 - 450 | 100 | 60 / 60 | plus | ABC18846 |
| Harvest35 | U35_9524 | 481 | 3e-25 | 391 - 450 | 100 | 60 / 60 | plus |
Contig Sequence (481 bp)
>U35_9524 481 Hv_44K_v2 GAACACAAGGAAGGCGAGCCTACACAAGTCACATGCATCTTCTCCTCATGGCACCCGTAA ACCGAGGAAACACAAGGAGGTCCAGGTCCATTGTTTTCCTTGTCCTTGTGATGGTTTTTG CTTGTACCATGTCATCCTTCCATGCACGAGGTGGAGAGCCATATTGCATAAATTCGCCAC TAGGATGCTCTGAGCCTAGTTGCATGGAAGAATGCAACTTAATAGACAAGGGTCTTCATT CCTTCTATTGCAACCACATTGGACAATGTTGTTGTTGGCCTCTATAGTTTGGTCGGAATC AACTATTCTGGTTACGGCTCGGTGACATCGAATGAATCTTTTGACCGTGCTCGTATGATG TAATCTCGGTCAATAAACTTCTTACATGGAATGCGCTGTTCTGTTTGATTTAGATGGAAT AAAATGTTCCTTTAGAATCTGATTAGTGGCATCTCCTTCATACCAAAAAAAAAAAAAAAA A
Homology of Contig U35_9524 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |