barSeed - Barley Seed Development Database

Probe CUST_3307_PI390587928

Source Contig U35_4134

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3307_PI390587928	Hv_44K_v2	TTGTAAGACGATGTAACAGTGAGTGCATTGGTGAAAGAGCAGTGTTCGCAAAGGAAAAAA	1671	GeneList: turquoise MasterList: Cell_cycle_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.269	1.359	1.095	0.913	0.496	0.476
Raw	2567.853	4233.690	3040.357	3875.370	773.299	793.742

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363778	2060	2e-23	1978 - 2035	100	58 / 58	plus	ABC10569
MLOC	MLOC_9783.1	3417	2e-23	3315 - 3372	100	58 / 58	plus	ABC10569
JLOC1	JLOC1_6344.1	2012	1e-23	1882 - 1939	100	58 / 58	plus
Harvest21	ABC10569	1744	2e-22	1672 - 1730	98	58 / 59	plus	ABC10569
Harvest35	U35_4134	1742	3e-25	1672 - 1731	100	60 / 60	plus

Contig Sequence (1742 bp)

>U35_4134 1742 Hv_44K_v2
GGTCGTCTTCAAGGCCTCGACACCAAGACTGGGGAGACTGTTGCGATCAAGAGAATCCGC
TTAGGGAAGTACAAGGAAGGTGTCAACTTCACTGCATTGAGGGAAATCAAGCTGCTTAAG
GAGCTGAAAGATCCTAATATTATAGAGCTAATTGATGCTTTCCCTTACAAGGGAAACTTG
CACCTTGTATTTGAATTTATGGAAACAGACCTGGAAGCAGTCATTCGTGACAGGAACATT
GTATTATCTCCAGCGGACATAAAATCTTATATTCAGATGATGCTGAAAGGTCTAGCCTTT
TGCCATAAGAAATGGGTGTTGCACAGGGATATGAAACCAAATAATCTACTTATCGGTGCT
GAAGGACAGCTCAAGCTTGGTGACTTTGGTCTTGCACGCATATTCGGGAGCCCAGAACGG
AACTTTACCCACCAGGTCTTTGCACGATGGTATCGAGCGCCGGAGTTACTGTTTGGCACT
AAGCAGTATGGATCTGCCGTTGATGTTTGGGCTGCTGGTTGTATTTTTGCCGAGTTGCTG
CTTAGACGACCATTTCTCCAGGGTTCTAGCGATATTGATCAACTCGGGAAGATCTTTGCA
GCGTTTGGAACTCCAAAGTCTTCTCAATGGCCAGACATGGTTTGTCTTCCAGATTACGTT
GAGTACCAATTTGTCTCTGCTCCCCCGCTTCGTTCTTTGTTTCCAATGGCCAGTGATGAT
GCTTTGGATCTTCTGTCAAGAATGTTTACATATGATCCAAAAGCAAGAATCACTGCTCAG
CAGGCACTGGAACACAGGTACTTCTCATCAGTACCAGCCCCAACAAAACCAAATTTGCTC
CCAAGGCCAAAGCTGAAAGGGGACCCAGGGAATGACAAGATACCTGATCTGAATCTGCAC
GGTGCCCCTGTTGTTGTGTCCCCGCCGAGGAAGTTGCGCAGAGTGTCTGCCCCTGATGGG
ATAGAAAGCAATGCTTATCGAGCAGAGAAAGCAGAAGAGCATCCTACTACAGGCATGAGG
CGCAGCGAGGGCATGTCCAGTCAGAGCTCTAGAATACCAATGTCAGTTGATGTTGGAGTT
GTGTTTGGCACGCGACCAGCTCCTAGACCAACATTGAATAGTGCCGACAAGTCGCGTCTA
AAAAGGAAACTAGACATGGATCCTGAATTTGAGTATGCAGAGTAAAAGAAGTTTGCATGC
ACCATTTTTTTCCTCACTGTTGTGTCGATATTTTATACATGTTCTTTGAAGAGGCAGTTC
CAGCAAAAAAGAATATGTCCAAAGCCGTAAAAGCTTCACTGAAGGTCGCCCAGAAAATCA
ACTGTGCTGTCATCGTATAACTGCCCAGCCAAGCTCGTGGACATGATTGTGAAGAGACGT
TGCTGATTTTGATTTGCAGCGAGAGACGTGCAAAGGTCATTCCTATAATTAGCCGATTTC
CATGAGGAAGGCCCCTCAATCTGTAACCTTCATTGGGTATACATGAGTTTGGCCCGGCGA
GAACATCAGCCTGTAATCTTTATCGGATATAAATGAGTTTGCCTTGGTGAGAAAATGTAT
TTCCATTTTTTTCTTGTGTGGACATTGAGCTTTTGAGTGTTGTTTAGTCAGACATGTTAG
GTGCAGTAATTCCTGTAACCAAGAGCAGGTTATAATATTATATGTTGATTCTTGTAAGAC
GATGTAACAGTGAGTGCATTGGTGAAAGAGCAGTGTTCGCAAAGGAAAAAAAAAAAAAAA
AA

Homology of Contig U35_4134 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g32600.1	425	0.0	protein\|cyclin-dependent kinase D-1, putative, expressed
Brachypodium v1_2	Bradi2g26510.1	420	0.0
Arabidopsis v10	AT1G73690.1	398	2e-179	\| Symbols: CDKD1;1, AT;CDKD;1, CAK3AT \| cyclin-dependent kinase D1;1 \| chr1:27715113-27717018 FORWARD LENGTH=398