barSeed - Barley Seed Development Database

Probe CUST_33076_PI390587928

Source Contig U35_9544

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33076_PI390587928	Hv_44K_v2	GGGTTTATAGGATAGCAACCGATTACATAGTGAAAAATGTAATTCCACAGTTTTAACGAG	385	GeneList: paleturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	31.259	7.613	1.165	0.616	0.942	0.839
Raw	221.701	86.593	11.659	7.958	3.018	3.255

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3645.3	1357	2e-24	1247 - 1306	100	60 / 60	plus	ABC19446
MLOC	MLOC_3645.1	1723	2e-24	1485 - 1544	100	60 / 60	plus	ABC19446
MLOC	MLOC_3645.2	2022	2e-24	1784 - 1843	100	60 / 60	plus	ABC19446
JLOC1	JLOC1_2189.1	1409	8e-25	1159 - 1218	100	60 / 60	plus
Harvest21	ABC19446	496	3e-25	386 - 445	100	60 / 60	plus	ABC19446
Harvest35	U35_9544	496	3e-25	386 - 445	100	60 / 60	plus

Contig Sequence (496 bp)

>U35_9544 496 Hv_44K_v2
CAAGCTAAAGTCGGGGGCCGGCAGTTCATCTTGGCAGGTCTTCCTCCATTTGGCTGCATA
CCCTTTCAGATCACATTGAGTGGAGACCCTGAGAGGGGTTGTGTGGATGAGCAGAACAGG
GAGGCCCAGGTCTACAACTCCAAACTTCAGAAGTTGATTCCAGCATTACAAGGCTCACTC
AGAGGAAGCAGAATTGTATACTTGAATGCATACGAAGCTTTTACGCAGATCATTGACAAC
AGCAATAAATACGGATTTACAGAGACAACACTGGGATGTTGTGGGACTGGGCTCACAGAG
GTCGGAATACTTTGCAACAGATTTACCCCTATCTGCAGGAATGTGTCATCCTATATATTT
TATGATGCGGTGCACCCAACAGAGAGGGTTTATAGGATAGCAACCGATTACATAGTGAAA
AATGTAATTCCACAGTTTTAACGAGTCAAATGCTCAAATAAGAATTTCCTCGTTGCATTA
AAAAAAAAAAAAAAAA

Homology of Contig U35_9544 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g61200.1	351	4e-69	protein\|GDSL-like lipase/acylhydrolase, putative, expressed
Brachypodium v1_2	Bradi2g53830.1	347	2e-66
Arabidopsis v10	None