- Probe CUST_33074_PI390587928
- Source Contig U35_9546
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_33074_PI390587928 | Hv_44K_v2 | AATCAGCCAGCTCTTCCTCCACGTCGACATCTCCAGGCCAGAGAGCGGCAAGTCGCTGCA | 407 | GeneList: orange MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.753 | 0.911 | 1.764 | 1.901 | 0.975 | 0.915 |
Raw | 172.336 | 322.245 | 553.550 | 931.850 | 170.797 | 173.245 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK375969 | 1212 | 2e-24 | 440 - 499 | 100 | 60 / 60 | plus | ABC30767 |
MLOC | MLOC_7806.1 | 690 | 2e-24 | 549 - 608 | 100 | 60 / 60 | plus | None |
JLOC1 | JLOC1_5156.1 | 629 | 8e-25 | 488 - 547 | 100 | 60 / 60 | plus | |
Harvest21 | ABC19740 | 540 | 3e-25 | 408 - 467 | 100 | 60 / 60 | plus | |
Harvest35 | U35_9546 | 540 | 3e-25 | 408 - 467 | 100 | 60 / 60 | plus |
Contig Sequence (540 bp)
>U35_9546 540 Hv_44K_v2 TTTCTCTCAATCTCTCCTCGCCATCTCAGGATGCTCCGCCGCGCCGCCCCCTCCGCCGCC ACGGCTCTCCTGCGCCGTGCCCTCTCCACCACACCACGGACACGCTCTCCCGCCGCGGCC ACCGCAGTCGCGTCCTCCTCGGCCGTGAACTCCATCCTCCTCCGCTCCCTCAAGGAGCAC TACCTCGAGGTCTGCAAAATGACGCCCCCGCCCAAGATCAGCCCGCCCAAGCCCTACACC ATCGTCAAGGGCGCCCTGGACCAGTCTTCGGGCCCCGTGCTCCGCCGCAGTTTCGGCGAG GCCGGAGAGGAGATCTCCATCTCTGTCGCCAGGCTCGCCAACATCATGCCCCCCGGCGCC GATTCTGACTCCGACGACTCCGACGGCGCAGGCGGGGCGAGCGAGTCAATCAGCCAGCTC TTCCTCCACGTCGACATCTCCAGGCCAGAGAGCGGCAAGTCGCTGCAGTTCCTCNTGTGG ATTGTACCCCGACGCCGTGGGGGATCCATTCCGTCTGCCTTCGGTCGAAACAGCGGCGTC
Homology of Contig U35_9546 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |