barSeed - Barley Seed Development Database

Probe CUST_33070_PI390587928

Source Contig U35_9550

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33070_PI390587928	Hv_44K_v2	TCTGGAGAGGACTATTAGTGGTCCGCAAAGGAGTACCAAATACTCGTTTCTTGACTGAAA	810	GeneList: mediumpurple3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	14.097	10.738	1.603	0.746	0.400	0.496
Raw	1234.231	1418.844	177.822	129.298	25.929	34.796

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366914	1116	2e-24	960 - 1019	100	60 / 60	plus	ABC21062
MLOC	AK358372	1195	2e-24	1000 - 1059	100	60 / 60	plus	ABC21062
MLOC	MLOC_70179.3	1127	2e-24	970 - 1029	100	60 / 60	plus	ABC21062
MLOC	MLOC_70179.1	885	2e-24	604 - 663	100	60 / 60	plus	ABC21062
JLOC1	JLOC1_46560.1	2042	8e-25	1728 - 1787	100	60 / 60	plus
Harvest21	ABC21062	981	3e-25	811 - 870	100	60 / 60	plus	ABC21062
Harvest35	U35_9550	981	3e-25	811 - 870	100	60 / 60	plus

Contig Sequence (981 bp)

>U35_9550 981 Hv_44K_v2
GGAGACGCCGTCCGCGGGGCTGCACGACCACTTCCGGGAGTACGGCGAGATACTCGAGGC
CGTCGTCATCACCGATCGAGAGACCGGCCGATCCAAGGGCTACGGATTCGTGACGTTCCG
GGACCCGGAGTCGGCGCAGCAGGCGGTGCAGAACCCGAACCCGATGATCGCCGGCCGGCG
CGCCAACTGCAACATTGCGTCCATGGGCCCGCCGCGGCCGTCGCCCCAGAGAGGTAGGGC
CCCGCGCGGGCCGGATCAGCAGCCCTCCTCGGGCCCACCGCCATACATGGGCGGCAGGAT
GCACCAGCAGATGCCCACCCCGCCTCACGCCATGTTCTACCACCCTTCACAGTACGGGTA
CTGGTACCCACCTGATTATCCATACCAGCAGGCCTTTTACAATTCTCAAATGCAGCAATA
CTACTCTCAGCAGTATGGCCAAACATCCCCTTCAACATCACCATACCCATACATGGGGTA
CATGACAAATGGCCAGAATCCTAGGGCTGGCTTCTCGCCATTGCAGCAGCAAGCTGCTCG
GCCGCCGTTCTTTCAGCAGCAGAGTGAGGGTTCTTTCCAGGCAGCGCCTACGCTCCCTCC
TAATTTCAGACTCCAGTTGCCCCCTCGTGCAATCTCAAGACAGTCTGATGATGTATCCGG
TTCAGAACCAACTCAGACTGTATCTGCAGCTGAGGCTACAAACACAGATAACCAAGAAGC
GTCAGCGCCTGTTGAAAGATCAAATTCAGAGGAAAACACCTCGAACTGACTCGCTGAACT
GAAAACTCTGCCAAAATGATTTGACGCCGATCTGGAGAGGACTATTAGTGGTCCGCAAAG
GAGTACCAAATACTCGTTTCTTGACTGAAAAAAAAAAAGAATAGCATCCAAATATTTGTT
CTTTCATTATTTCTGATTCATTTCCTATTTCTGCACTGCATTTATTTGGTGAATCCATTG
TATTGCGAAAAAAAAAAAAAA

Homology of Contig U35_9550 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g51890.1	320	5e-80	protein\|RNA recognition motif containing protein, putative, expressed
Brachypodium v1_2	Bradi3g58710.1	316	2e-105
Arabidopsis v10	None