barSeed - Barley Seed Development Database

Probe CUST_3306_PI390587928

Source Contig U35_4135

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3306_PI390587928	Hv_44K_v2	AGCTGGTTTCAAACTTTAATCCATGAGCCCAGGCTGCAACTCATTTTCTCGTGGTACTTG	28	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_1921.2	1221	7e-23	49 - 108	98	59 / 60	minus	ABC02273 ABC02275
MLOC	MLOC_1919.1	993	7e-23	899 - 958	98	59 / 60	plus	ABC02273 ABC02275
MLOC	MLOC_1919.2	1100	7e-23	910 - 969	98	59 / 60	plus	ABC02273 ABC02275
MLOC	MLOC_1921.1	2062	9e-22	1500 - 1557	98	57 / 58	plus	ABC02273 ABC02275
MLOC	MLOC_1919.3	1445	9e-22	876 - 933	98	57 / 58	plus	ABC02273 ABC02275
MLOC	MLOC_1919.4	1425	9e-22	856 - 913	98	57 / 58	plus	ABC02273 ABC02275
JLOC1	JLOC1_1168.2	1092	4e-23	46 - 105	98	59 / 60	minus
JLOC1	JLOC1_1168.1	1112	4e-23	46 - 105	98	59 / 60	minus
Harvest21	ABC27941	666	3e-25	29 - 88	100	60 / 60	minus
Harvest21	ABC02275	1608	1e-23	421 - 480	98	59 / 60	minus	ABC02275
Harvest35	U35_4135	1236	3e-25	29 - 88	100	60 / 60	minus
Harvest35	U35_35195	310	1e-23	229 - 288	98	59 / 60	plus
Harvest35	U35_4136	1014	1e-23	33 - 92	98	59 / 60	minus

Contig Sequence (1236 bp)

>U35_4135 1236 Hv_44K_v2
GCTGAAGTGCCGGCAGCAGGNGCTCCCCCAAGTACCACGAGAAAATGAGTTGCAGCCTGG
GCTCATGGATTAAAGTTTGAAACCAGCTTTCATAGACCCGGATGCTATTGAAGCGATAGC
TGGCTTGACTTTGCTTTTCTTCAAAGCATCTTGACAAACCAAAATCCGTCATTTTTGGCA
CCATGTTTTCGTCTAGCAATATATTTGCAGGTTTTAGGTCTAAGTGGTGAATATCGATCT
CTGAATATATTGATAACCTTCACAAATTTGCTGATTATTTTTGTAGCGCTCTTTCATGAG
AAATGATTGTCCCACATGCATATCCATGACTAAAAAAAGCAAAAAAGTAATAATTGGGTG
TTGTGTTCTCACAAAGAAAGATGGAAAAGTTTAACAAAAACTTGTGAAGGAAGATGAATG
CTTTGATTATGCATGAATCCATAATGATAAAGTGCTATTGAATGATCAAGTAATTTGTAA
GGTTTTTATTATCTTCGCAAGAGTTGTATTGTTAATTTAGACCTAGACATGCAAGTATAT
TTCTAGGAGAAAGCACAATGCTGAAAGTTGCGGATTTTTGTCTCTCAAGTTGCTTGGAGG
AAAAACAAAGCCAGGCTATTGCTTCAAAACAGTTTGGATCTATGTATGAAAGCAGGGACA
TTGATGACCTGTGTTGGCCCACTTGTTTGCCTGATAACAAGGTATGTATATATCATAACC
TATGGTTGCAATACTCACTTGCAAGGTCGAAATCATGGGGAGCATCGTAGAAACACATAC
TATGCACATAATAGTCAATTGACTTACAAAACAGAAAACACAAAGAGTATATTCAGACAT
CAGTTGTGCTGGTATACTCACTTATGTTCCATGACATGCTTCAGTAACCTCTTTTTTTAG
AGCCTAGTGTACATCTTTAGGTACTTCAAGCTGGTGGAGGAGGTCAAGTGGCATTAGTTG
TCTAAGAGATAAATGTTCCAAAGAGCTGCAGCGAAGTCCACCAATGTACAATTGTTGTTT
AGCACCAGACAGAGTACATGTATTAGATCATTTTGCCTTCAGTATTAAGCCGATTGTCTT
GGTTGTTATTATATCTGATGGAGTACATATTTGGAGGAATCCTTTATAGTTTATTGCAAA
AAGAGTGTAATGTCTTACCTTCATAACCTATGCGTGATATATGTATTGCGTCCTGAGATA
ATAAATGGCAATATTCTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_4135 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None