barSeed - Barley Seed Development Database

Probe CUST_33069_PI390587928

Source Contig U35_9551

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33069_PI390587928	Hv_44K_v2	TGGTCCGAGTCCCTCCACGGCCTCGCCGACAACGGCCCGGGCGTCAACTTCTCCTCGGGC	264	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60721.1	2774	2e-24	2142 - 2201	100	60 / 60	minus	ABC08591
JLOC1	JLOC1_39624.2	3105	8e-25	369 - 428	100	60 / 60	plus
JLOC1	JLOC1_39624.1	2606	8e-25	226 - 285	100	60 / 60	plus
Harvest21	ABC19798	383	3e-25	265 - 324	100	60 / 60	plus
Harvest35	U35_9551	384	3e-25	265 - 324	100	60 / 60	plus

Contig Sequence (384 bp)

>U35_9551 384 Hv_44K_v2
TTCGACACGAGCATGTCTGCCCCTTCCCTCCTCCTCGCGCTCCTCCTCGTCGTGGCCGGC
GCCGGGGCAGGCGCCGCCGGGCCGCCGAATGCGCGCGCGTGCGCGTCGGCCGAGGCCAAC
GCCTACGCGTTCTGCGACGGCTCGCTCCCGTTCCCCGTCCGCGCGCGCGCGCTCGTCTCC
CTCCTCACCCTCGACGAGAAGATAGCGCAGCTCTCCAACACCGCGGCGGGCGTGCCGCGC
CTCGGCGTCCCGCCCTACGAGTGGTGGTCCGAGTCCCTCCACGGCCTCGCCGACAACGGC
CCGGGCGTCAACTTCTCCTCGGGCCCCGTCGCCGCGGCCACCATCTTCCCCCAGGTCATC
CTCTCCGCGGCCGCCTTCAACCGC

Homology of Contig U35_9551 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None