barSeed - Barley Seed Development Database

Probe CUST_3305_PI390587928

Source Contig U35_4136

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3305_PI390587928	Hv_44K_v2	CATGGATATGCATGTGGGACAATAATAGCTCTACAAAATAATCAGCAAATTTGTGAAGGT	259	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_1921.2	1221	2e-24	276 - 335	100	60 / 60	minus	ABC02273 ABC02275
MLOC	MLOC_1921.1	2062	2e-24	1273 - 1332	100	60 / 60	plus	ABC02273 ABC02275
MLOC	MLOC_1919.3	1445	2e-24	649 - 708	100	60 / 60	plus	ABC02273 ABC02275
MLOC	MLOC_1919.4	1425	2e-24	629 - 688	100	60 / 60	plus	ABC02273 ABC02275
MLOC	MLOC_1919.1	993	2e-24	672 - 731	100	60 / 60	plus	ABC02273 ABC02275
MLOC	MLOC_1919.2	1100	2e-24	683 - 742	100	60 / 60	plus	ABC02273 ABC02275
JLOC1	JLOC1_1168.2	1092	8e-25	273 - 332	100	60 / 60	minus
JLOC1	JLOC1_1168.1	1112	8e-25	273 - 332	100	60 / 60	minus
Harvest21	ABC02275	1608	3e-25	648 - 707	100	60 / 60	minus	ABC02275
Harvest35	U35_4136	1014	3e-25	260 - 319	100	60 / 60	minus

Contig Sequence (1014 bp)

>U35_4136 1014 Hv_44K_v2
GAGATCTGAAGCCGCCGGCAGCAGGGCTCCCCCAAGTACCACGAGAAAATGAGCTGCAGC
CTGGGCTCATGGATTAAAGTTTGAAACCAGCTTTCATAGACCCGGATGCTATTGAAGTGA
TAGCTGGCTTGACTTTGCTTTTCTTCAAAGCATCTTGACAAACCAAAATCCGTCATTTTT
GGCACCATGTTTTCGTCTAGCAATATATTTGCAGGTTTTAGGTCTAAGTGGTGAATATCG
ATCTCTGAATATATTGATAACCTTCACAAATTTGCTGATTATTTTGTAGAGCTATTATTG
TCCCACATGCATATCCATGACTAAAAAAAGCAAAAAAGTAATAATTGGGTGTTGTGTTCT
CACAAAGAAAGATGGAAAAGTTTAACAAAAACTTGTGAAGGAAGATGAATGCTTTGATTA
TGCATGAATCCATAATGATAAAGTGCTATTGAATGATCAAGTAATTTGTAAGGTTTTTAT
TATCTTCGCAAGAGTTGTATTGTTAATTTAGACCTAGACATGCAAGTATATTTCTAGGAG
AAAGCACAATGCTGAAAGTTGTGGATTTTTGTCTCTCAAGTTGCTTGGAGGAAAAACAAA
GCCAGGCTATTGCTTCAAAACAGTTTGGATCTATGTATGAAAGCAGGGACATTGATGACC
TGTGTTGGCCCACTTGTTTGCCTGATAACAAGGTACTTCAAGCTGGTGGAGGAGGTCAAG
TGGCATTAGTTGTCTAAGAGATAAATGTTCCAAAGAGCTGCAGCGAAGTCCACCAATGTA
CAATTGTTGTTTAGCACCAGACAGAGTACATGTATTAGATCATTTTGCCTTCAGTATTAA
GCCGATTGTCTTGGTTGTTATTATATCTGATGGAGTACATATTTGGAGGAATCCTTTATA
GTTTATTGCAAAAAGAGTGTAATGTCTTACCTTCATAACCTATGCGTGATATATGTATTG
CGTCCTGAGATAATAAATGGCAATATTCTGTACCGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_4136 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None