barSeed - Barley Seed Development Database

Probe CUST_33059_PI390587928

Source Contig U35_9561

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33059_PI390587928	Hv_44K_v2	GCCCGAACTTGTACTCTACTAGCTTAGACAAAAGATGTTTATGATGAGATCATTTGTTTA	488	GeneList: royalblue MasterList: Transcription_factors_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.466	4.474	1.221	0.831	0.542	0.568
Raw	63.741	110.482	24.204	27.687	4.558	5.916

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16609.2	1662	2e-24	10 - 69	100	60 / 60	minus	None
MLOC	MLOC_16609.1	1458	2e-24	31 - 90	100	60 / 60	minus	None
JLOC1	JLOC1_11448.2	1496	8e-25	1393 - 1452	100	60 / 60	plus
JLOC1	JLOC1_11448.1	1499	8e-25	1396 - 1455	100	60 / 60	plus
Harvest35	U35_9561	608	3e-25	489 - 548	100	60 / 60	plus

Contig Sequence (608 bp)

>U35_9561 608 Hv_44K_v2
CATGATCGATCGATCATTCAGGACCCCATTCCAAAGCACTGTTGAATGTGCATGCCGGCC
GGGCTGATGAGGCTGCACATGTGTGCATGATTTTGCAGGACAACGGCAGCAGCAGCAGCA
GNTACATGATGCAAACAGTAGGTGAGCCGAGGCACGAACTGTTCAATCAAGTGGTGTTCA
GTAACTACATGTGCCCTTTCCAGCAGTGAAAGGAAGGGCCCTACATTTGACGACGCCTAG
GGGAGGAAATAATGCTGGCCAGGGTGGTGACTGAGTTGAAGGGAAGCACCAGATGAGTAT
GAGATGTTGGATGATCTAGTAATCCATCCCCTTGTCTGGTGGCATGCATGCATGCAGTAG
TAGAGAGAGACCAGTACGTGAAGTACTAGCAACTAGAGCTATTAATTAATCAATTATTAT
TAGCAGTAGAACGAACCAGAGAGGCTTGTCATTGCAGCTAGCATCTTTCCAAGTGATGCC
TTGCCATCGCCCGAACTTGTACTCTACTAGCTTAGACAAAAGATGTTTATGATGAGATCA
TTTGTTTATATAAAAAGAGAGCCATTTCTACTGTGAAAAAAAAAAAAAAAGAAAAAAAAA
AAAAAAAA

Homology of Contig U35_9561 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None