barSeed - Barley Seed Development Database

Probe CUST_33054_PI390587928

Source Contig U35_9566

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33054_PI390587928	Hv_44K_v2	ACCACGAGGAGTGGATCGAGAATCACCCGTCAGCATTGGAGTGGTTCGAGGGCGTGCTCG	382	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4115.1	1673	2e-24	384 - 443	100	60 / 60	plus	ABC21324
JLOC1	JLOC1_2511.1	1630	8e-25	379 - 438	100	60 / 60	plus
Harvest21	ABC21554	502	3e-25	350 - 409	100	60 / 60	plus
Harvest35	U35_9566	535	3e-25	383 - 442	100	60 / 60	plus

Contig Sequence (535 bp)

>U35_9566 535 Hv_44K_v2
ATCAAACCACTTCCCCCACTCCCCCCGAACCATCGTCATCACCTACAGCCTCTCTTTCTC
TTGGTCCGCTGCTCCCGTCGTAGCCCACGCATCCTGTTGCTTTTCTGCCGCCGCTTCTTC
GGTCTCTCCCCTGTGCTGGTCCGCGCTCTCGTCATGACGAACCACGCCGCCTTTGCTGCC
GAGGACGCGGTCACCGCCGTGGCGGCGCCGGCGCAGCCGGGTCGCCATTTCGCGTCGTTC
CCGCCGCGGAGGGCGCGCGACTGCAGGAAGGCCGCCCTCGGGCGCATGGACCTCTCCACC
TCGGGGGTGCTGATGGCAGGGTCTCTGCTGGAGACCATGAAGGCCTCCTCGCCCCGCCAC
GCCATGTCCGCCGTCGGCGCCGACCACGAGGAGTGGATCGAGAATCACCCGTCAGCATTG
GAGTGGTTCGAGGGCGTGCTCGCGGCGGCCGAGGGGAAGCAGATCGTCATGTTCCTGGAC
TACGACGGCACCCTGTCGCCGATCGTCAAGGACCCCGACAGCGCCGTCATGACCG

Homology of Contig U35_9566 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None