barSeed - Barley Seed Development Database

Probe CUST_33053_PI390587928

Source Contig U35_9567

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33053_PI390587928	Hv_44K_v2	ATTTGTACTCGACCGAGATGTTAATTCCAAACCGGTTGAAAGCTCGTCTGCCTGTGTTCT	874	GeneList: brown4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.425	1.063	1.246	0.786	0.503	0.472
Raw	116.494	125.391	140.102	129.303	31.105	31.208

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60457.1	1985	7e-23	596 - 655	98	59 / 60	plus	ABC18500
JLOC1	JLOC1_39423.1	1917	4e-23	563 - 622	98	59 / 60	plus
Harvest21	ABC20826	935	3e-25	875 - 934	100	60 / 60	plus
Harvest35	U35_9567	935	3e-25	875 - 934	100	60 / 60	plus

Contig Sequence (935 bp)

>U35_9567 935 Hv_44K_v2
TAGAAATGCTCTTACGGCTATCTAATGTTGCACTGCCTTCACAAGTAGCCCATCAGGTCT
TCCGTGTATTTGTGAGATGGGCTACTGATATCCATTCTGTGAGTGACAAGAAGAACGATC
TAGTTTACTTGAAAGATTCTCTTCAGAAGTTAGAGACAATGATATTGCCAACCCTGGTTG
ATAAATGGGTCTCTCTCCATCCATCTTTTGGCCTCGTTTGCTGGTCAGATGATGATGAGT
TGAAACAACACTTTAGGAACTGTATTGATGTCGACTTCATACAATTTGGTGAACTTTCTG
CCGAGGACAAGCAAATTCTGTATGGAAGAGTTGCTGCATTGATGAAAAGCCTAGGTATCC
CCGCGCTATCCAAGGTTGTGCATCGTGAAGCAATATTCTATGGTACGTCTGACAACAAGG
AGAAGGCTACTTTACTTTGTGGACTGTTACCATATATGCAACGTTACATCTATAAGATGC
ATAGAGATGCATATATCAACTTTCAGCAAAATGAGATCATGAAGCTTAGCAATCTTCAAA
TTATTGTTGTTGAAAAGTTGTTCCACAAGTATATGCTTAAAGGACATGAGAGTTCTTCTA
AGAAAAGATTCAAATGCCATTGTCTTCTGCAGGGAAATATTCTGTATGCTACGCAAGAAG
CTGATTCCCATTCATTGTTTCTGGAAATTTCTAGAGTTTTCTTTGATGGATCCCCTGATC
TGCACTTTGCGAATTTTCTGCACATGGTCAAAACCATGGCAGAATCTGGCACCTCAGCAG
AACAGGTTGAGTCTTTTATCGTTAATAATCAGAATGTGCCTGCGTTGCCTGAAGAGGAAG
CAGTTTGGTCCTTTTCTTCCTCGTNTTTGCCAGAATTTGTACTCGACCGAGATGTTAATT
CCAAACCGGTTGAAAGCTCGTCTGCCTGTGTTCTC

Homology of Contig U35_9567 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g58910.2	2656	1e-146	protein\|expressed protein
Brachypodium v1_2	Bradi1g04980.1	2679	4e-165
Arabidopsis v10	AT4G13750.1	2729	2e-82	\| Symbols: NOV \| Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein \| chr4:7975191-7987558 FORWARD LENGTH=2729