barSeed - Barley Seed Development Database

Probe CUST_3304_PI390587928

Source Contig U35_4137

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3304_PI390587928	Hv_44K_v2	GTGGAAGCTAAAAAAGACATTGTGATTTCTGAACATCGACCATTTCAGTACAACAAGTTT	1869	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.814	2.482	1.104	0.817	0.465	0.605
Raw	65.031	91.361	35.378	42.503	7.190	11.645

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59487.1	2771	2e-24	2711 - 2770	100	60 / 60	plus	ABC11464
MLOC	MLOC_59487.3	2820	3e-21	2767 - 2820	100	54 / 54	plus	ABC11464
JLOC1	JLOC1_38715.1	2894	8e-25	2711 - 2770	100	60 / 60	plus
Harvest21	ABC11464	1612	1e-24	1554 - 1612	100	59 / 59	plus	ABC11464
Harvest35	U35_4137	1954	3e-25	1870 - 1929	100	60 / 60	plus

Contig Sequence (1954 bp)

>U35_4137 1954 Hv_44K_v2
GATTGCAGAGTTTTGAAAAAGGTGGAACAGCTCCTAAGTTTGTCATAATCGATGATGGGT
GGCAATCGGTCAGTATGGACCCTGCTGGAAGTGCATTCGTATCTGATAATGCAGCCAACT
TCGCAAACAGATTATATGATATCAAGGAGAACCACAAATTTCAGAGAAATGGGAGGAAGG
GTCATAGGGAAGAAGATCCATCAAACGGCCTCGCGCATATTGTCAGTGAAATTAAGGGGA
AACATGAGCTAAAGTATGTTTATGTATGGCATGCCATTACCGGATATTGGGGTGGCGTAA
GGCCCGGTGCCGACGGGATGGAGCATTACCAATCAAAGATGCAGTATCCTGTGTCATCAC
CAGGGGTCCAGAAGAACGAACCCTGTGAGGCCTTCAACAGCATAGCAGATAACGGCCTTG
GCCTTGTGGACCCTGACAAAGTGTTCAGCTTCTACAATGAGCTCCACTCCTACCTCGCGT
CTGCCGGAGTGGACGGTGTGAAAGTAGACGTGCAAAACATTCTCGAGGCGCTAGGCAGTG
GCCATGGTGGGAGAGTGCTTCTGTCTAGGAAGTACCAGCAGGCTCTAGAAGCTTCCATCG
CACGGAATTTCCGCGACAACGGTATAATATGTTGCATGAGCCATAACACTGATAACTTAT
ACAGTTCAAAAAGAAACTCGGTTGTGAGAGCCTCTGATGATTTCTGGCCTAGAGACCCAG
CTTCGCATACCATACACATCGCATCTGTCGCGTACAACACTGTTTTCCTTGGAGAGTTCA
TGCAGCCTGACTGGGACATGTTCCATAGCGTTCACCCAATGGCGGAATACCACGCCGCGG
CACGGGCAGTCGGCGGTTGCGCTATATACGTGAGTGACAAACCAGGAAGCCATGACTTCG
ATCTGCTGAGGAAGCTTGTGCTTCCTGACGGATCGATCCTGCGAGCCAAACTCCCCGGGA
GACCGACCAGGGACTGCCTCTTCTCTGATCCTGCAAGGGACAGCAAAAGCATTCTCAAGA
TCTGGAACCTGAACGCGCACTCCGGCGTGATCGGCGCCTTCAACTGCCAAGGCGCCGGTT
GGTGCCGAGAAGGGAAGAAGAACCTCATCCACGACGTGCAGCCCGGGACCATCACCGGGG
CCGTCCGGGGACGGGACGTGAACCGCCTTCAGGAGGTCGCCGGCGATGGCTGGAACGGCG
ACGCGATCGTGTACTCGCATGTAGCAGGAGAGGTGACCGTCCTGCCCAAGGACGCGGCGG
TGCCGGTGACGCTGAAGCCGCGCGAGTACGAGGTGTTCCCCGTGGTGCCGCTGAAGCGGC
TGCCGAACGGCGCCTCCTTCGCGCCGATCGGCCTGGTCGGGATGTTCAACTCCGGCGGCG
CGGTGACGGACGTGAGGTACGGCGACGACGCCCGCGTGGAGGTGAAAGTGCGGGGCGCGG
GCACGGTTGGAGCCTACTCCTCGGCGAGGCCGAAGAGCGTGGCGGTGGATTCGGTGGCGG
TTGGTTTCTCCTACGACGACGGCTCCGGCCTGGTCAAGTTCGAGGTCGGCGTGCCGGAGC
GGGAGCTCTACTCGTGGACGGTCTCCATAGGGTACTGAGGCAAGATCTTCTGCCTTACGA
GGGTGTTATCCTAGCACTATTACAGTAAAGTTCAGACGGGGGTTCTGAATGTTTTTCTTT
GGCAAGAACGAATGAAGGTTTCTGGAAGTGTGCCGAAGCCGGGCCTGGGGATTGGGGAAG
CTGTGATGTCTTTGTTCTTGGCTTCTTGCAGACGTTGCCGCTAGCACGCTATTTTGTGTT
GCTTGCGATTTACGGAGTATATTATTTGCGCTGCTGCGACTACAGGGGTGCTTGACCTGT
ATTCCCACGGTGGAAGCTAAAAAAGACATTGTGATTTCTGAACATCGACCATTTCAGTAC
AACAAGTTTTTCATTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_4137 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os08g38710.1	754	protein\|uncharacterized glycosyltransferase, putative, expressed
Brachypodium v1_2	Bradi3g39220.1	765
Arabidopsis v10	AT1G55740.1	754	\| Symbols: AtSIP1, SIP1 \| seed imbibition 1 \| chr1:20835507-20838707 REVERSE LENGTH=754