barSeed - Barley Seed Development Database

Probe CUST_33047_PI390587928

Source Contig U35_9575

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33047_PI390587928	Hv_44K_v2	CTAGTGAGGCGGATCTCAAGACCTATGTAATGCAATGCATGAATAAAGCATTGTAAAAAA	1011	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.245	1.530	0.969	1.587	0.418	0.372
Raw	88.610	39.189	21.595	49.803	3.709	3.847

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC20464	1161	3e-25	1012 - 1071	100	60 / 60	plus	ABC20464
Harvest35	U35_9575	1161	3e-25	1012 - 1071	100	60 / 60	plus

Contig Sequence (1161 bp)

>U35_9575 1161 Hv_44K_v2
GAAGATGTCTAATCTTCATCTAGTACCGCAAATCTTTGTGTTATGCACCATACTTTTAGT
GCATCAAGGCATGGCAGATCGACTTTCTCTTGATACCCATGAGATATGCATTCTTACACG
AGCCATGGATGCATCGTCGGTGCTCATTAGTATGAAGGAAAACCGAACAAGTTCACAATA
TACAAATTGCAATATTACTTCAGCAGATATTACATATATGTCTCAGATGTCATATGCACG
AGCTTTACCATTGAAAGGTGATGGTGACACAAAATATTATTTTGCCGCACATTTGACGAA
AGGTAATGATAAGGCATACTATGGAATATCCGCTATCATGGATGTGTATGGACACAACCT
TAATGTCGGACAACTTTCAGCGGGTGCGATTTGGATTCATAACTGGGAACGTGATGTTGA
TAAAAACCTCAATACAATTATTGTTGGTTGGGTGGTTTGGCCATACCGATTTAATGACTC
GCGTACTCACCTTTTTACGGTTTGGACGAAAGATAATTATCGGAATACAGGCTGTGTCAA
CCTTGATTGTCCTGGTTTTCAACTCGTGAAGGGGTCCCCAATATCTCCCGGTGATATCAT
AAGCCCTGTCTCTGGTATCAATACAAAACGCCAAACGATTACTATTAGAGTGTCCAAGGA
AACTTCAAGTGGGGATTGGTGGTTGTATTGTGGCATCAACAAAGCCCCAACTCGAGTAGG
TTACTTCCCAGCATCGCTATTTAATAGCTTATCTTCGAAAGCCACTCAAATCTCTATTGG
AGGCCATGCTCGAAGTACTACAAATACTACAGCTCCTCCAATGGGAAGTGGAGCCTTTGC
CTCTATCCCTAGTAAAGCTGCATCTATCCATGATATATGGCTCATCCACAATGATGGTAG
AAGCACCCCAATTGACAATGATGGACCCACTAAAGTTACAGATGGCAAGCTCTACTCTGC
CTCACCTATAGAAAGAGGGCAATTCTTTTATGGAGGCCCAGGAGGGAAATCCTAGTGAGG
CGGATCTCAAGACCTATGTAATGCAATGCATGAATAAAGCATTGTAAAAAAATATGACAG
TTTATATAGTTCTTGGTTGTGGGGTGATCCTTATTGACATAATAAAAGTTTGTTGAAAAT
TGACAAAAAAAAAAAAAAAAA

Homology of Contig U35_9575 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g29370.1	303	5e-72	protein\|ZmEBE-1 protein, putative, expressed
Brachypodium v1_2	None
Arabidopsis v10	None