barSeed - Barley Seed Development Database

Probe CUST_33037_PI390587928

Source Contig U35_28344

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33037_PI390587928	Hv_44K_v2	AAGATATCAGTCAAGACCATGCACACAAAACGGTGACTATCGAAGACCACCCACACTTGT	614	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66486.1	1418	2e-24	941 - 1000	100	60 / 60	plus	ABC04358 ABC04360 ABC04361
JLOC1	JLOC1_43817.1	1644	8e-25	983 - 1042	100	60 / 60	plus
Harvest21	ABC04361	1425	3e-25	906 - 965	100	60 / 60	plus	ABC04361
Harvest21	ABC04360	1044	3e-25	601 - 660	100	60 / 60	minus	ABC04360
Harvest21	ABC04359	992	3e-25	889 - 948	100	60 / 60	plus
Harvest35	U35_37022	520	3e-25	385 - 444	100	60 / 60	plus
Harvest35	U35_28344	718	3e-25	615 - 674	100	60 / 60	plus
Harvest35	U35_15936	1565	3e-25	906 - 965	100	60 / 60	plus

Contig Sequence (718 bp)

>U35_28344 718 Hv_44K_v2
GCTCGGCGTTCCTCGAGAGGGCGTCCTCTCCGTCCCCGAGTTCATCCTCGCCGGCGACAA
CCTCGTGTCCAAGTGCCCCACCTGGTCCTGGGAGAAGGGCGATCCGAGCAAGAGGAAGCC
GTATCTCCCCTCCGATAAGCAGTTCCTCGTCACCAGGAACGTGCCTTGCCTAAGACGAGC
CATGTCGGTCGAGGAAGAGTATGATGCAGCGGCGGCTGAGGTTGTCCTTGATGATGACGA
CGACGGCGAAGGCTGGCTCGCAACACATGGGGTGCAAGAGTCGAAAGAGGAGGAAGACAT
TCCGTCTATGGATACATTGGACATAGGGAAAGTCGAAGAGATCAAATCTATCCCCTCGTA
CTTTGGTGCTAGTGAAAAGCCAGATGAGGAGGAGGATATACCTGACATGGACACCTATGA
AGACACAGGAGATCATTCAACAGCTACCCCTCAGCCTTCATATTTTGTCGCAGAAGAGCC
TGATGATGACAACATTCTTCTTACTAGAACATATGATGTCAGCATCACATATGACAAGTA
CTATCAAACTCCACGTGTCTGGCTTACAGGCTATGATGAGGCAAGAATGCCATTAAAGCC
TGACCTTGTGTTTCAAGATATCAGTCAAGACCATGCACACAAAACGGTGACTATCGAAGA
CCACCCACACTTGTTAGCAGGACAGCACGCCTCAGTGCATNCTTGCAAGCATGCTGCT

Homology of Contig U35_28344 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g10290.2	317	4e-135	protein\|autophagy-related protein 3, putative, expressed
Brachypodium v1_2	Bradi3g33350.1	317	1e-136
Arabidopsis v10	AT5G61500.1	313	2e-102	\| Symbols: ATATG3, ATG3 \| autophagy 3 (APG3) \| chr5:24734216-24736711 REVERSE LENGTH=313