barSeed - Barley Seed Development Database

Probe CUST_33033_PI390587928

Source Contig U35_28346

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33033_PI390587928	Hv_44K_v2	TCATTTGAAATGGTTCATTGCTCCCGATGTCGTGTTGACTGGCATGAAAATGATGGAATA	581	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.153	1.130	1.515	1.236	0.690	0.553
Raw	51.674	68.800	91.340	112.718	23.375	20.078

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70309.1	2410	2e-24	842 - 901	100	60 / 60	plus	ABC49870
MLOC	MLOC_70309.2	2401	2e-24	1322 - 1381	100	60 / 60	minus	ABC49870
JLOC1	JLOC1_46659.2	2476	8e-25	913 - 972	100	60 / 60	plus
JLOC1	JLOC1_46659.1	2372	8e-25	892 - 951	100	60 / 60	plus
Harvest21	ABC27163	644	3e-25	582 - 641	100	60 / 60	plus
Harvest35	U35_28346	644	3e-25	582 - 641	100	60 / 60	plus

Contig Sequence (644 bp)

>U35_28346 644 Hv_44K_v2
GACTTGATGTGTGTCCTTTGGAACACAACGAGTATGTTCCCTGTCACGATGCTGCCTATG
TGAGCAAGTTAAGGGAGCTGGATAGATCTAGACACGAGAATCTTGAAGCTAAATGCCCTC
CACGAGAGGAGAGCTTGTTCTGTTTGGTGCCTCCACCAAACGACTACAAGATACCTATAA
GATGGCCAACAAGTCGGGACTATGTATGGCGTAGTAATGTGAACCATTCACACCTTTCTG
AGGTAAAAGGAGGACAGAATTGGGTGCATGAGAATGGTAAGCTTTGGTGGTTTCCTGGAG
GTGGCACTCACTTCAAGCATGGTGCAACAGAATACATAGAGAGGCTAGGAAATATGACAA
CCAATAGTACTGGTGATCTCCGTTCAGCAGGAGTTGTTCAAGTTTTGGATGTTGGATGCG
GTGTTGCCAGCTTCTCTGCTTATCTTCTTCCCCTAGATATTCATACTATGTCATTCGCGC
CAAAAGATGGCCATGAGAATCAAATCCAGTTTGCTTTAGAGCGTGGGATTGGTGCGATGA
TCTCTGTGTTGGCCACAAAGCAATTACCGTATCCTGGAAATTCATTTGAAATGGTTCATT
GCTCCCGATGTCGTGTTGACTGGCATGAAAATGATGGAATATTG

Homology of Contig U35_28346 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g31480.1	608	3e-147	protein\|methyltransferase, putative, expressed
Brachypodium v1_2	Bradi2g27070.1	603	2e-148
Arabidopsis v10	AT3G10200.1	591	2e-130	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr3:3157618-3160016 FORWARD LENGTH=591