barSeed - Barley Seed Development Database

Probe CUST_33031_PI390587928

Source Contig U35_28348

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33031_PI390587928	Hv_44K_v2	CAAAAAATGGGGATGGGTATCGAGAGTTCCGTGGTGTTTCTGCTAGGCATTATGATACAA	626	GeneList: darkorange2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.105	1.079	1.139	0.885	0.434	0.438
Raw	419.050	596.146	583.913	692.329	123.177	137.316

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355156	2322	2e-24	1371 - 1430	100	60 / 60	plus	ABC17381
MLOC	MLOC_62339.4	2179	2e-24	1091 - 1150	100	60 / 60	plus	ABC17381
MLOC	MLOC_62339.5	1487	2e-24	511 - 570	100	60 / 60	plus	ABC17381
MLOC	MLOC_62339.1	2255	2e-24	1104 - 1163	100	60 / 60	plus	ABC17381
MLOC	MLOC_62339.2	1980	2e-24	1104 - 1163	100	60 / 60	plus	ABC17381
MLOC	MLOC_62339.3	2075	2e-24	1099 - 1158	100	60 / 60	plus	ABC17381
JLOC1	JLOC1_40792.5	2268	8e-25	1087 - 1146	100	60 / 60	plus
JLOC1	JLOC1_40792.3	2008	8e-25	1104 - 1163	100	60 / 60	plus
JLOC1	JLOC1_40792.2	2005	8e-25	1101 - 1160	100	60 / 60	plus
Harvest21	ABC27166	695	3e-25	627 - 686	100	60 / 60	plus
Harvest35	U35_28348	695	3e-25	627 - 686	100	60 / 60	plus

Contig Sequence (695 bp)

>U35_28348 695 Hv_44K_v2
GGGAGAAAGCGTCAGCAATGGCTGGAATGATGAGAGAAATGGGGACAGAGAAAGTGGAGG
TGGCGATCCCACGTTTAATGTTGAGGAGGCCGAGCAGTTCCTCTGCTCCATGCTTGGAGA
TCGTTCTGAGCTCAGCATGGGTGTGGTCAGAGACGTGCTGGGTCAGTCTGGATATGATGT
TGAGCAGGCTCTGGACGCATTGCTTGATATCTCCGGTATGGGATGGTGCATTCCCAATGA
CGAAATGAATGGCTCATCCTCTCCAAATATCTTCCCAGGAAATGGATTATTTGAAGAAGA
ATCTGCTGCAAGTATTCAAAAGAGTCCATGCCAGTTCCCAGAAGAAATACCTGGTATGTC
ATACAATCACTCCGAAAGGCAACATGAATTCTTCTGGGGGGAACAACAGAGCAGCTACAT
GAAGGCTGTTTGCGAGGTGCAACACTCGGAAACACCGTCTCCAAGATCAGCGGTGGTGGA
TTCCAAGATGCCACAGCGAGTCTTGGAGTCGCTGTTCAAAATACCTGAACGGCGCACATA
TGAGCCAAGTAAAATGGACTGGAAGAAGGTAGTGAAGAAGCTGCAGTCATACAATCATCC
TATCACAGCAAGCAATCAAGAAAGACCAAAAAATGGGGATGGGTATCGAGAGTTCCGTGG
TGTTTCTGCTAGGCATTATGATACAATGAAAGGGT

Homology of Contig U35_28348 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g12530.2	569	9e-97	protein\|smr domain containing protein, expressed
Brachypodium v1_2	Bradi2g07430.1	590	5e-118
Arabidopsis v10	None