barSeed - Barley Seed Development Database

Probe CUST_33015_PI390587928

Source Contig U35_16375

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33015_PI390587928	Hv_44K_v2	ATTCGTTGTACACCGGAAGCCTGTAAATCAATTATGGGGCAGGGTGAGATTCGGAAAAAA	1383	GeneList: yellow MasterList: Hydrolysis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.496	3.806	0.652	0.695	0.678	1.159
Raw	69.960	120.873	17.910	30.731	9.840	19.861

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365718	1471	7e-23	1387 - 1443	100	57 / 57	plus	ABC05219
MLOC	MLOC_5621.1	2053	7e-23	1658 - 1714	100	57 / 57	plus	ABC05219 ABC33851
JLOC1	JLOC1_3631.1	2479	4e-23	1698 - 1754	100	57 / 57	plus
Harvest21	ABC05220	597	3e-25	58 - 117	100	60 / 60	minus
Harvest21	ABC05219	1507	3e-25	1378 - 1437	100	60 / 60	plus	ABC05219
Harvest35	U35_16375	1513	3e-25	1384 - 1443	100	60 / 60	plus

Contig Sequence (1513 bp)

>U35_16375 1513 Hv_44K_v2
GAGCCGCTCTACTATAATAGAACGAAAAAACGCAAGGGCTCCAAACGGCCAGACCACATA
CATCGGCCAAGGGCAAGGGCAGGGGCTGAGAGGAGAGAGCTTAGGCAATGGAGCTCCGGG
CCTCGTCGTCGCTCCTGCCCTGCATCCTGCTGCTCTCGCTCTTCTCATCAGTGGGCACAG
TGTCGGCGCAGCAAAAGTTCGGCATAAACTACGGGCAGATCGCAAACAACCTGCCGGACC
CGACGCAGGTGGCGAGCCTGCTCCGGTCGATGAACGTGAACAAGGTGAAGCTGTACGACG
CGGACCCCAAGGTGCTGACGGCGTTCGCCAACACGGGCGTGGAGTTCATCATCTCCGTGG
GCAACGAGAACCTGCAGACCATGGCCAGCAGCCCCGGCGCGGCGCGGCAGTGGGTGGCGC
AGCACGTGCAGCCCTTCATCCCGGCCACCCGCATCACCGGCATCATCGTCGGCAACGAGG
TGCTGGGCAACAACGACACGGCCATGGCGGCCAGCCTCGTGCCCGCCATGCAGGCCGTCT
ACGACGCGCTGGCCGCGCTCGGGGTGGGCGGCGGCCAGGTGACGGTCTCGTCGGCGCACT
CGGTGAACGTGCTCGCCACCAGCTTCCCGCCGTCGTCCGGCGCGTTCCAGGAGGGCGTGG
CGCAGTACGTGAAGCCGCTGCTCGACTTCCACAGCAAGACGGGCTCCCCGTTCCTCATCA
ACGCCTACCCCTTCTTCGCCTACAAGGGGAGCCCCGGCAGCGTGTCGCTGCCGTACGTGC
TGTTCCAGCCCAACGCCGGCGTGCGCGACGGCGGCCTGGTGTACGACAACATGCTGTACG
CGCAGATCGACGCGGTGTACGCGGCCATGAAGGCCATGGGGCACGCCGACATCGGCGTGC
GGGTGTCGGAGACGGGGTGGCCGTCCAAGGGGGACGAGGACGAGGTGGGCGCCACCGCGC
AGAACGCGGCGGCGTACAACGGCAACCTCATGCAGCGGATCGCCATGAGCCAGGGCACGC
CGCTCAAGCCCAGCGTGCCCATCGACGTGTTCGTCTTCGCGCTCTTCAACGAGAACATGA
AGCCCGGCCCGGCGTCCGAGAGAAACTACGGACTCTTCTACCCCAACGGCTCGCCGGTGT
ACGCCATCAACGCCGGCACCGCCGGGGCCAACCCCGGCTTCGGCGGCTCCGGCGGGGGCT
CGTCGGTGGGGCGGTTCGACCCGTACTCGTCGCAGTCCATGTTCTCGTCCGCGTCAAGAC
TGGCGGCCTCGGTAAGAAGAAGATTATCTTCTTTGGCGCTACTGCTGGTATTGCCCATGG
TGTCAGCATTGTTGGCGAGCTAAACCAAATTAAATTAAACTAAGCTAGCGATTCATCATC
ATCATTCGTTGTACACCGGAAGCCTGTAAATCAATTATGGGGCAGGGTGAGATTCGGAAA
AAAAAAAAAAAAAAAATGCCCGTCCCTGAAAGTTTTTCCTTTCCCTTCTCTTATTATTCC
CGTCCCAATGATC

Homology of Contig U35_16375 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g64170.2	394	0.0	protein\|glycosyl hydrolases family 17, putative, expressed
Brachypodium v1_2	Bradi2g55690.1	399	0.0
Arabidopsis v10	AT2G27500.1	392	9e-133	Glycosyl hydrolase superfamily protein \| chr2:11752364-11753844 REVERSE LENGTH=392