barSeed - Barley Seed Development Database

Probe CUST_33014_PI390587928

Source Contig U35_30669

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33014_PI390587928	Hv_44K_v2	CTCCGGCGCCTCCTCGAGGGCGCCGCGGGCCAGGACCCGGCCTTCGTCTGCGACGCCTGC	235	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357841	1427	2e-24	598 - 657	100	60 / 60	plus	ABC18743
Harvest21	ABC30685	295	3e-25	236 - 295	100	60 / 60	plus
Harvest35	U35_30669	295	3e-25	236 - 295	100	60 / 60	plus

Contig Sequence (295 bp)

>U35_30669 295 Hv_44K_v2
TCGCTGCGCGGGGTGCGGCGCACCTTCGCGGACTGCTCGGCCGCGCGGGCCATCCTGCGC
GGCTCCCGCGTCGCCGTCGACGAGCGGGACGTGTCCATGGACGCCGCGCTGCGCCGCAGA
GCTGCAAGCGCTGCTCGCGGCCCGGGGCCGCGCCTTCTCGCTCCCGCAGCTCTTCATCGG
GGGCCGGCTCGTGGGCGGCGCCGACAAAGTCCGGCAGCTGCACGAGTCCGGCCAGCTCCG
GCGCCTCCTCGAGGGCGCCGCGGGCCAGGACCCGGCCTTCGTCTGCGACGCCTGC

Homology of Contig U35_30669 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None