barSeed - Barley Seed Development Database

Probe CUST_33010_PI390587928

Source Contig U35_42640

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33010_PI390587928	Hv_44K_v2	CCATTAGCTGTGCAATTGATGATCCTTTAGATCCATTTTTGCTTTTACCTTTTATCCAGA	560	GeneList: brown4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.806	1.432	1.620	0.862	0.462	0.730
Raw	29.960	28.460	37.051	31.109	4.505	9.203

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13125.1	2819	2e-24	2377 - 2436	100	60 / 60	minus	ABC15654
JLOC1	JLOC1_8853.1	2766	8e-25	2378 - 2437	100	60 / 60	minus
Harvest21	ABC38428	631	3e-25	561 - 620	100	60 / 60	plus
Harvest35	U35_42640	631	3e-25	561 - 620	100	60 / 60	plus

Contig Sequence (631 bp)

>U35_42640 631 Hv_44K_v2
GAAAACATCTTTATCTAATTTTCAAAAAGATCACAACCAGAAATCTGAAGCAATGAAAGA
CTGCATTGTAGATTCGTGCGAGTCACAATCAGGAATCACTACAAGTGTTCATTCTAATGG
AAATTTGTCAAAAAGCCGAGATGAGGGTGTTGTTCCTACAGTGCATGCATTCAATGTGCT
TAGAGCTGCCTTTAATGATGCAAATTTAGCAGCTGACACTTCGGGTTTCTGTGCTGAGGC
AACGATAGTTGCAATACATGCATTTTCATCTCCTTACTGGGAAGTGCGTAATGCAGCTTG
TCTTGCATATACTGCACTGGTTCGCCGCATGGTTGGGTTTTTGAATGTGCAGAAACGCGA
ATCCGCACGGCGGTCAATATCTGGCCTTGAATTCTTCCACAGGTACCCGGCACTTCATCC
TTTCCTTTGTAGTGAACTGGAAGTTGCAACAGAACTATTAGCTGATGTGGTTTCCTGCAA
TTTAGAGTCACATATCGCANAAGCCATACACCCCAGCTTGTGCCCTATTCTTATTCTTTT
ATCAAGGCTTAAGCCGTCACCCATTAGCTGTGCAATTGATGATCCTTTAGATCCATTTTT
GCTTTTACCTTTTATCCAGAAATGTGCTACC

Homology of Contig U35_42640 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g07290.2	1587	7e-99	protein\|HEAT repeat family protein, putative, expressed
Brachypodium v1_2	Bradi3g15920.1	2168	4e-108
Arabidopsis v10	AT3G55160.1	2130	1e-66	unknown protein; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2428, death-receptor-like (InterPro:IPR019442); Has 357 Blast hits to 330 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 144; Fungi - 118; Plants - 50; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). \| chr3:20445629-20452400 REVERSE LENGTH=2130