barSeed - Barley Seed Development Database

Probe CUST_33009_PI390587928

Source Contig U35_42641

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33009_PI390587928	Hv_44K_v2	TGTAAATGGATACTGGTTTGATAGAGCGCAGAAGATGAAGGAAAATCTTCAGGAAACAAT	406	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374946	1749	2e-24	667 - 726	100	60 / 60	plus	ABC10881
MLOC	MLOC_56780.1	1068	2e-24	356 - 415	100	60 / 60	minus	None
MLOC	MLOC_56780.2	803	2e-24	97 - 156	100	60 / 60	minus	None
JLOC1	JLOC1_36755.1	837	8e-25	642 - 701	100	60 / 60	plus
Harvest21	ABC38431	540	3e-25	407 - 466	100	60 / 60	plus
Harvest35	U35_42641	540	3e-25	407 - 466	100	60 / 60	plus

Contig Sequence (540 bp)

>U35_42641 540 Hv_44K_v2
TTGGGGGCGGCACGAGGGTACACCTCCTTGCCTGAACCCTCGTGCCTTCCTCCTCTCTCC
CGCCCTAAATCGGTTCTGCATGTAACCGAATACGCATGTNGTCCACCTCCTGCCTAGCCC
CTCCCCCTCTGCGGCTCCCCTGCCGTAGGGTTAGGCTCCCACCTCCCTCCGCCGCCGTCG
GCGCCACCGTCGCCGCCGAGAGGCCATCACTCAGGTTTAAGCCTCGCGGGGCTGCTCCCA
CCAAGGGATGGAGGCTGGTTCACATCTCATGCTTCAGGCAGGAGCAAGACGTGTCAACAT
CTGATGATGGCATCAATTTCGAGTACAATGAGCAGGCAGAGATCTCANAGGACTCTGACC
TGAAGGAGGAAGATGGTGGAAGCCCCAACAGGGATGATCAGAATTATGTAAATGGATACT
GGTTTGATAGAGCGCAGAAGATGAAGGAAAATCTTCAGGAAACAATNTTCAGATTTTGGA
ATGGGCGCTGGGCGGTACCTTGGACTGGACAAACAATNGCCCAGGTCATGTTTTTGTGGA

Homology of Contig U35_42641 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None