barSeed - Barley Seed Development Database

Probe CUST_33008_PI390587928

Source Contig U35_16379

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33008_PI390587928	Hv_44K_v2	TGTTTCATGTACAGTACTTTGTTGGATGCCAGCTGAGAGACACCTGACTATCAGTGTGTT	1990	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.287	1.254	1.078	0.976	0.438	0.442
Raw	1602.087	2441.692	1840.727	2625.873	414.400	452.145

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38451.1	2146	2e-24	2022 - 2081	100	60 / 60	plus	ABC05264 ABC05265
JLOC1	JLOC1_24999.1	2051	8e-25	1893 - 1952	100	60 / 60	plus
Harvest21	ABC05264	2081	1e-24	1991 - 2049	100	59 / 59	plus	ABC05264
Harvest35	U35_16379	2095	3e-25	1991 - 2050	100	60 / 60	plus

Contig Sequence (2095 bp)

>U35_16379 2095 Hv_44K_v2
CAGCCGCCGTTCCGCCTCCGCCCCCGCCCCCGCCCCCGCCGCCGCGTCCTCCCCGACGAG
ATCCGCCGGCCTCCCGCATCGACCCGCCACCCGTCCCCGAGATGGAGAGGGTGCTCAAGG
ATGACGCCATACAGGAGAAGGGCGAGCGCGCCAGGATGGCATCTTTCGTTGGTGCCATGG
CGATCGCGGACCTGGTCAAGACCACACTGGGGCCAAAAGGAATGGACAAGATCCTTCAGT
CGACTGGCCGAGGGCGGAGTGTCACCGTTACAAATGATGGGGCTACCATTCTCAAGTCCC
TCCACATCGACAACCCTGCTGCCAAGGTCCTTGTTGACATCTCAAAAGTTCAAGATGATG
AAGTTGGTGATGGAACAACTTCTGTTGTTGTTTTGGCCGGAGAACTTTTGAGGGAGGCTG
AGAAGTTGGTTAACATGAAGATTCACCCGATGACTATTATTGCAGGTTACAGAATGGCTG
CTGAGTGTGCCAGAAATGCTTTGTTGCAGAAGACCATGGACAACAAAGATAATACAGACA
AGTTCAGATCAGATCTCATGAACATCGCCATGACTACGCTTAGCTCGAAAATTCTCTCCC
AGGACAAGGAGTATTTTGCTGAACTTGCAGTTGATGCCGTCCTCAGGCTTAAGGGTAGCA
CCAACTTGGAATCAATCCAAATTCTGAAGAAACCTGGAGGATCTCTCAAGGATTCTTTTT
TGGACGAAGGGTTCATCCTTGATAAGAAGATTGGCCTTGGTCAACCAAAGCGGATTGAGA
ACGCTAATATTTTGGTTGCGAACACCGCTATGGATACAGATAAAGTTAAGATTTATGGGG
CACGTGTCCGGGTGGATTCAATGTCTAAGGTTGCAGATATTGAAGCTGCTGAAAAGCAGA
AAATGAGAGAGAAAGTTGAGAAAATCATTGGTCACGGGATCAACTGCTTTGTCAACAGGC
AGCTAATCTACAACTTTCCTGAAGAACTTTTTGCTGATGCTGGCATCCTTGCAGTTGAGC
ATGCTGACTTTGAGGGCATCGAGCGGTTAGCTCTTGTCACGGGTGGCGATATTGCATCAA
CTTTTGATAACCCAGAGTCTGTCAAGCTTGGGCACTGCAAGCTCATCGAAGAGATTATGA
TTGGGGAGGACAGGCTGATTCATTTCTCCGGGGTTGCGATGGGGCAAGCTTGCACCATTG
TCCTGCGAGGAGCGAGTGAGCATGTGCTTGATGAGGCTGAGAGGTCCTTGCATGATGCCC
TATGTGTGCTTTCTCAGACAGTAAATGACACGCGTGTCATATTTGGCGGTGGATGGCCTG
AGATGGTGATGTCCAAAGAGGTGGATGAACTTGCAAGGAGGACCCCTGGGAAGAAATCTC
ATGCGATTGATGCTTTCTCGCGTGCCCTGCAAGCCATCCCAACAATCATAGCTGATAATG
CTGGCCTGGATAGTGCCGAGCTGATCTCCCAGCTCCGAGCTGAGCACCACAAAGAGAACA
GCACTATTGGGATCGACGTCATCAGCGGCGGGCTGGGAGACATGCAGAAGCGTGGTATCT
GCGAGGCGTTCAAGGTGAAGCAGGCAATCGTCCTGTCCGCGACCGAGGCTGCGGAGATGA
TCCTGAGGGTCGACGAGATCATAACCTGCGCCCCGCGCAGGAGAGAGGACAGGATGTGAT
TCTCGCGAGCAGTTTTGATACTGGGCTATCTTATGTATGGTTTGCCGAGTTGTGGCTGGG
TGATCGTGGGTCCGCGCTGCTTTAAAGTTGACTCCATTTCGATTGTCGTCGAATCCTGAC
CCCTAAGCGACTGCAACTTGTTTGGACTAGCTAGCGTTCTGTAGGGAGTGGCTTCGGCTT
TCTTGAGTTATTTACCACTAGAAAATATAGTGATGTGTAAGTTGTAACCTTGTTTTAAGT
GCATCTTTGCATGCGGAGCGCGCTTGTTTCGGAACATGCTTGCACTGCTGCAACTGTGAG
TTTTCCATCTTGTTTCATGTACAGTACTTTGTTGGATGCCAGCTGAGAGACACCTGACTA
TCAGTGTGTTGGCTGAAATCGGATCCAGTCCTGTTGCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_16379 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g42220.1	526	protein\|T-complex protein, putative, expressed
Brachypodium v1_2	Bradi2g16500.1	526
Arabidopsis v10	AT5G20890.1	527	TCP-1/cpn60 chaperonin family protein \| chr5:7087020-7089906 REVERSE LENGTH=527