barSeed - Barley Seed Development Database

Probe CUST_33001_PI390587928

Source Contig U35_28353

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33001_PI390587928	Hv_44K_v2	TCCAGGTTGCTTCTCAATTATGGTTTTGTTGATGAGGACAATCCATATGACCGCATAGCA	631	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356136	1797	2e-24	1030 - 1089	100	60 / 60	plus	ABC07244 ABC07245 ABC07246 ABC48713 ABC49860
MLOC	AK357610	1927	2e-24	1030 - 1089	100	60 / 60	plus	ABC07244 ABC07245 ABC07246 ABC48713 ABC49860
MLOC	AK367993	1854	2e-24	1015 - 1074	100	60 / 60	plus	ABC07244 ABC07245 ABC07246 ABC48713 ABC49860
MLOC	MLOC_4057.1	2185	2e-24	1618 - 1677	100	60 / 60	minus	ABC07244 ABC07245 ABC07246 ABC49860
JLOC1	JLOC1_2464.2	1105	8e-25	214 - 273	100	60 / 60	plus
JLOC1	JLOC1_2464.1	813	8e-25	214 - 273	100	60 / 60	plus
Harvest21	ABC27173	694	3e-25	632 - 691	100	60 / 60	plus
Harvest21	ABC07244	1652	3e-25	983 - 1042	100	60 / 60	plus	ABC07244
Harvest35	U35_28353	694	3e-25	632 - 691	100	60 / 60	plus
Harvest35	U35_17460	1729	3e-25	983 - 1042	100	60 / 60	plus

Contig Sequence (694 bp)

>U35_28353 694 Hv_44K_v2
GAGGCGGCGACGAGTCCGTCGCTGAATTGTTAACGACAAACAAATTGTCTGAGCTGGCAT
GCTTGGCATTGTATCTCATGTATGAGAAGAAGCAAGGAAGAGATTCACTTTGGTACCCGT
ATATTAAAGAACTTGATCGTCAGCGAGGCAGGGGGCAGCTAGCTGTTGAATCACCTCTTT
TATGGACTGAAAGTGAATTGGATTACCTGAATGGCAGCCCCATGAGGGATGAAGTTGTTG
TCAGAGATGAGGGAATAAAAAAAGAGTATAATGAGCTTGACACATTGTGGTTCATGGCAG
GTTCATTGTTTAAGCAATACCCTTTTGATGTGCCTACTGAGGCATTTCCGTTTGAGATCT
TCAAGCAGGCATTTGTTGCGGTACAGTCTTGCGTGGTTCATTTGCAGGGCTGTCCAGGAC
TCCAGGTCGAGGAACTGGGCTGTTTGTGTCCGACGAGAAGGTTAGTTTAGCACGAAGATT
TGCACTAGTTCCCTTGGGCCCACCACTATTGACGTACAAGAGCAACTGCAAAGCAATGCT
GACAGCTGTTGATGGTTCTGTTCGATTGCTGGTTGATCGGCCATACAAAGCAGGAGAACC
AATAATCGTTTGGTGTGGGCCACAACCAAACTCCAGGTTGCTTCTCAATTATGGTTTTGT
TGATGAGGACAATCCATATGACCGCATAGCAATC

Homology of Contig U35_28353 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g13460.1	510	6e-110	protein\|SET domain-containing protein, putative, expressed
Brachypodium v1_2	Bradi4g39580.1	517	2e-115
Arabidopsis v10	AT5G14260.3	514	4e-100	Rubisco methyltransferase family protein \| chr5:4601139-4603873 FORWARD LENGTH=514