barSeed - Barley Seed Development Database

Probe CUST_33000_PI390587928

Source Contig U35_28354

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33000_PI390587928	Hv_44K_v2	CAGGCTTATGTGTGATGGTTGAACCCTAATTCAGTCATAACTTCCGCATTGCACTCATGT	622	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374944	2765	2e-24	1278 - 1337	100	60 / 60	plus	ABC26239 ABC44247
MLOC	MLOC_77838.1	2127	2e-24	668 - 727	100	60 / 60	plus	ABC26239 ABC44247
MLOC	MLOC_77838.3	2024	2e-24	565 - 624	100	60 / 60	plus	ABC01962 ABC26239 ABC44247
JLOC1	JLOC1_51889.2	2049	8e-25	565 - 624	100	60 / 60	plus
Harvest21	ABC27176	685	3e-25	623 - 682	100	60 / 60	plus
Harvest35	U35_28354	685	3e-25	623 - 682	100	60 / 60	plus

Contig Sequence (685 bp)

>U35_28354 685 Hv_44K_v2
GGCCGATCGGGACGAGCGCGGAGGCGACCAACGCGGGCACTTCTCTGCTTCCTCGACCTC
CAAGGAAGAACTATGACAAGGCTATCAAGCGTTTCTTGGTGAGGAACATCGTGGAGCAGG
CTGCTGTCAGATATGTGCAGGAGGCTTGTTTGCATGATGGTACAATATCTCTTGTTTATT
GTTACACTTGTACATGCCAGTTTTTATTTATCACTAGTAACTACATACTGTAAACACCTC
ATATATGTGCTCTTGTGTCCAGGATATGTTCTTCCCAAGCTGTATGCCAAGGTGCACCAT
TGTGTTTCTTGTGCCATCCATGCTCACATTGTCTGTGTCTGCCCCCGTGAGAACAAGAGG
AACCGTGAGCCCCGCAGCGCTTCAAGCGCAGGGTGTGATTTTAAGAACCTATATGCTCGC
TTTGCTTGCAAATAAGTGTTGAGGTTTTCTTGTATGTTGTTCCGATTTTAATTGTTAGAT
AGAAGTTTGAGGTTCATAATGAGTAGTACACCATGGCTAGTTCTTCACTTTTTTAGTGTT
GCTTTTGGCGTTGCATTCTCTGTGTACATGTCATAATGGATGCGTCAATGGAAGCATAAA
TAAACATTTCTGGGGTGTATTGCAGGCTTATGTGTGATGGTTGAACCCTAATTCAGTCAT
AACTTCCGCATTGCACTCATGTGAA

Homology of Contig U35_28354 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None