barSeed - Barley Seed Development Database

Probe CUST_32_PI390587928

Source Contig U35_7839

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32_PI390587928	Hv_44K_v2	GCTTTCAATCTGGGAAATTGGACAAGGTTTGGACTACTTTTTTGATGTTCTGTAGAAATA	1181	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.367	1.917	1.315	0.673	0.232	0.273
Raw	406.324	916.156	539.172	429.843	53.498	67.415

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_21284.1	1491	2e-24	150 - 209	100	60 / 60	minus	ABC17534
MLOC	MLOC_21284.2	1209	2e-24	150 - 209	100	60 / 60	minus	ABC17534
JLOC1	JLOC1_14774.1	907	8e-25	705 - 764	100	60 / 60	plus
Harvest21	ABC17534	1339	3e-25	1182 - 1241	100	60 / 60	plus	ABC17534
Harvest35	U35_7839	1339	3e-25	1182 - 1241	100	60 / 60	plus

Contig Sequence (1339 bp)

>U35_7839 1339 Hv_44K_v2
GCACCATATCCTCATATTGGACTGCGTATTGTTAAACGCACGGTGGCCAGCTGTTGCCAA
TCCTCTACATATGCGGGCCCAGAGTCCGCCGAAAATTGGGAGTCCATCAGTTGTCCACCC
AAAGATTTGCGACTTTGGCCTCAGGGTCATTAGCAATGGTGAGCTTCATGTGCTACTTGT
TCGAACAGCTTTACTCCCCTTCTCAGTGCCTTGCAATTTTCCCTTTTTGTAGGATCGACC
AATTGTCAGCCAGTAAGCAACTAGATGTATAAACACAAAAGGAATTCTAAAGGCTATGAT
ATGGCAAAGTTGTTCAGCACGAAGCTTACTCATGTATCACCAGTGTGGTATGACTTGAAG
AGTGATGGGAATAAGCTATCTTTGGAAGGACAGCACAATTATGATGCTGGATGGGTCTCA
GAACTTCAAAATGACGGTTCTTTGGTAGTGCCAAGAGTTGTCTTAGAGGCATTCCCTGGT
GTTGTACTTCTGAAAAAGAAGCCAAGGGACAAAACCATTGAACTAATAGTGAGCGAATGC
AGGGATAAGGGGTATGATGGTGTTGTGCTGGAATCCTGGTCAAGATGGGCTGCTTATGGT
GTGCTAGATGATCCAGAGCTGCGCCAACTGGCACTTCAGTTTGTTAAGCAGCTGGGCGAG
GCTTTGCATTCTCTCAGTTCAAAATCAAGTACCAGGAACCATTTGGAACTAATTTATGTT
ATCCCAGCTCCACGGATGGAAGGGCCCAACAATCAAGACTTTGGACCAGAAGATCTCCTG
CAGTTGGCTGACTCAGTAGATGGTTTTTCTCTTATGACATATGACTTCTCTGGACCACAA
AACCCTGGCCCCAGTGCACCTCTGAAGTGGATACAATATTCTTTAACAACACTTCTTCAA
GCCAAGGGTTCTGCTTCTCAAGGCCATTCTCACATGATATTCCTTGGGATGAATTTCTAT
GGGAATGATTTTCTATTTTCTAAAGGTGGTGGGGGTAGTTCTATTACTGGAAGGGATTTC
ATTCATTTACTTGAGAAGTATAAGCCATCTTTGCAATGGGATGACAAAAGTTCAGAGCAT
TTTTTTATATATTCGGATAAAGGTGTGAGGCATGCTGTATTTTATCCAACGCTATTGTCT
CTTTCTGTACGTTTGGATGAAGCGCAAGATTGGGGGACAGGGCTTTCAATCTGGGAAATT
GGACAAGGTTTGGACTACTTTTTTGATGTTCTGTAGAAATATCTATTTATGAATGTTATT
TTTTGCACAATTCCAGTTAGTCTTAAACAACTTCTGATGTGAAGTACTAAAAAGATACTT
GTAAAAAAAAAAAAAAAAA

Homology of Contig U35_7839 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g43220.1	261	2e-140	protein\|chitinase domain-containing protein 1 precursor, putative, expressed
Brachypodium v1_2	Bradi2g43770.1	430	0.0
Arabidopsis v10	AT4G01040.1	430	7e-141	Glycosyl hydrolase superfamily protein \| chr4:453383-455407 FORWARD LENGTH=430