barSeed - Barley Seed Development Database

Probe CUST_32995_PI390587928

Source Contig U35_28357

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32995_PI390587928	Hv_44K_v2	TAATGAGATAACTGGATGCTTTCTAGTGACAGTTGCTGTGGTAATAACTGTATCAAGTGG	343	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374210	1649	3e-21	400 - 459	97	58 / 60	plus	ABC19050
MLOC	AK359895	1840	3e-21	874 - 933	97	58 / 60	plus	ABC19050
Harvest21	ABC27180	406	3e-25	344 - 403	100	60 / 60	plus
Harvest35	U35_28357	406	3e-25	344 - 403	100	60 / 60	plus

Contig Sequence (406 bp)

>U35_28357 406 Hv_44K_v2
CGTCGTCGCCACCGGTACCGGGAACCGCCTGCTACTACAAGCTCGCCCTCGTCCCGCTCC
GCCAGTACCCCTTTTTTCTCGCGCAGGGCGCCACGTTCCCCTATGAGGTTGTCTATTTCT
CAATCCTGTTTTTTCGCTATCAAGCTGGCACTGTTACGGATGAGATGCTTTCTGTACCAC
AGAAGCCTTTTATACTCATAGGCCTTTTGTTGGCTCTAGCAGCAGCGTCAGGGATGGCTG
CTGGAGCTAGTCTTTCTGGGGCTTCAATACCAATATTATCACAGACCTACCTTGTATGGC
AGCTTCTTTTGTCTGCTATTTTCCTAAAGAGGCGCTATAGAGTTAATGAGATAACTGGAT
GCTTTCTAGTGACAGTTGCTGTGGTAATAACTGTATCAAGTGGATC

Homology of Contig U35_28357 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None