barSeed - Barley Seed Development Database

Probe CUST_32988_PI390587928

Source Contig U35_16380

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32988_PI390587928	Hv_44K_v2	ACATCTATGGCTGGAATCGGTCCCGGTTTTGATTCTGATGAGTTGTGCAACAAGATAGGA	1161	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.465	1.427	1.134	0.752	0.298	0.312
Raw	17019.500	25143.633	18011.667	18075.890	2615.997	2960.990

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_41812.1	2243	8e-25	2082 - 2141	100	60 / 60	plus
Harvest35	U35_16380	1253	3e-25	1162 - 1221	100	60 / 60	plus

Contig Sequence (1253 bp)

>U35_16380 1253 Hv_44K_v2
CAAACACTGCTATGGACACAGATAAAGTTAAGATTTATGGGGCACGTGTCCGGGTGGATT
CAATGGCCAAGGTTGCAGATATTGAAGCTGCTGAGAAACAGAAAATGAGAGAGAAAGTTG
AGAAAATAATTGGCCACGGGATCAACTGCTTTGTCAACAGGCAGCTAATCTACAACTTTC
CTGAAGAACTTTTTGCTGATGCTGGCATACTCGCAGTTGAGCATGCTGACTTTGAGGGCA
TTGAGCGGCTAGCTCTTGTCACTGGTGGTGATATTGCATCAACTTTTGACAACCCAGAGT
CTGTGAAGCTTGGGCACTGCAAGCTCATCGAAGAGATTATGATTGGGGAGGACAGGCTGA
TTCATTTCTCTGGGGTTGCGATGGGGCAAGCATGCACCATTGTCCTGAGAGGAGCAAGTG
AGCATGTGCTTGATGAGGCGGAGAGGTCCTTGCATGATGCCCTATGTGTGCTTTCTCAGA
CGGTAACTGACACACGTGTCATATATGGTGGTGGATGGCCTGAGATGGTGATGTCCAAGG
AGGTGGATGAACTTGCAAGGAAGACCCCTGGAAAGAAATCTCATGCGATTGACGCATTTT
CACGCGCCCTGCAAGCCATCCCCACAATCATTGCTGATAATGCTGGTCTGGATAGTGCTG
AGCTGATCTCCCAGCTCCGAGCCGAGCACCACAAAGAGAACAGCACTGCTGGAATTGATG
TCATCAGCGGCGGGCTGGGAGACATGCAGAAGCGTGGGATATGCGAGGCGTTCAAGGTGA
AGCAGGCCATCGTCCTGTCGGCAACCGAGGCCGCGGAGATGATCCTGAGGGTCGACGAGA
TCATAACCTGCGCCCCGCGCAGGAGGGAGGACAGGATGTGAGCGCTGTTTCGATGCGGCG
CTCTCTTATGTATGATGGTTTGCCGAGTTTTGGCTGGGTTGCTGTGGTCCACGACTGCTT
TAAAGTTTGACCGACCCCCATTTCGATTGTCGTTGAATCCCGACCCCTATAAGCGATCTG
GAACTTGTAGCTGCTAGCGTTGTTCTGTAGGGAGTGGCTTGGTGTTGTTTCAGTTGATTT
TCCACTAGAGGATATAGTGATGTACTTTGTGTTTGCTGTTGGATATCTATCAGCCGTTGC
TATTAGTGTTGTGGACATGGCACATCTATGGCTGGAATCGGTCCCGGTTTTGATTCTGAT
GAGTTGTGCAACAAGATAGGACCTGTGCGCTTGGATCAAAAAAAAAAAAAAAG

Homology of Contig U35_16380 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g42220.3	402	0.0	protein\|T-complex protein, putative, expressed
Brachypodium v1_2	Bradi2g16500.1	526	0.0
Arabidopsis v10	AT5G20890.1	527	1e-177	TCP-1/cpn60 chaperonin family protein \| chr5:7087020-7089906 REVERSE LENGTH=527