barSeed - Barley Seed Development Database

Probe CUST_32982_PI390587928

Source Contig U35_16383

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32982_PI390587928	Hv_44K_v2	ATGGTGATTACTACAGTGCAAGTTGTTAAGTTAATTGGTTTTACCGTGCCTAGAGCGGCC	390	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.163	1.389	1.565	1.003	0.380	0.442
Raw	319.055	601.944	584.936	592.426	78.986	99.147

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_16383	874	3e-25	391 - 450	100	60 / 60	plus

Contig Sequence (874 bp)

>U35_16383 874 Hv_44K_v2
TGATCAGGTGTTGTTTCTTGGGCGAAGGTGCTCCAGGGCTGTGTCTGTGTCTCGGTATGG
GTTGCCGGGCGACTGCATCTTGTTCTTGGATGACGAGGAAGTGAATCGTGCCAAATACGT
CTATGGTGAGCAGAACACCTTTTGCCGTGCCTATAACATGAGAGACAAACGGGTCTTTTC
CCCTCATCCACTCATCTCCTGGAAGCGCTCTAATGAGACCTGTCTTGCAGCATGGCTCTT
CCCTCAGGACTGAATCACTGAACTGAAGATGTTATTGTTGTTCCAGCTGCTTCCAAGTTG
GTATGGTAATCAGTAGTTACCAAGCCGCCAATTTGCCTTAGTAATTTAAGTATGTACTGA
ATTTGATCACCGTATTTATCTGAACCTACTATGGTGATTACTACAGTGCAAGTTGTTAAG
TTAATTGGTTTTACCGTGCCTAGAGCGGCCGCTGCCGACATTGAGACAACGGCCCTCGGG
GCCGCATACGCAGCAGGGTTAGCTGCCGGAGTCTGGACGAAGGAGGAAATATTCGCAGGC
CTGCACAAGGAGAACACAACGGTGTTCCGCCCCAAGTTAGACGATGCACACAGGAAGAGA
AGAGGAGACTCCTGGTACAAGGCGGTTTCGAGATCATTTGACCTGGCTGACCTTTCTCTC
TAGTTTGTTACACATTGCTGCGCCGTAAATTGGACCAGTTTGTGCCAGCCCTTGTTTGTC
TTGTCAACGAATAAACGGTGTGTTGTACATTATTTCGGTGCGATTCTTCTTTGGCTTTAT
AGGAAGAACTGGAGCATAAATGTCCTTGTATATCTATAAGTACACGAGGATATGGAGCGG
CCGCTCGAGCATGTTCGAAAGGGCCCAATTCGCC

Homology of Contig U35_16383 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None