barSeed - Barley Seed Development Database

Probe CUST_32981_PI390587928

Source Contig U35_30677

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32981_PI390587928	Hv_44K_v2	TTTGATAGCACTGTCTACTGGGGCTTGGAACGGGTTAGCAGCATGCATGGAAATAATAAC	436	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_35254.1	918	2e-24	413 - 472	100	60 / 60	minus	ABC01762 ABC01765 ABC33810
Harvest21	ABC30695	721	3e-25	437 - 496	100	60 / 60	plus
Harvest35	U35_30677	721	3e-25	437 - 496	100	60 / 60	plus

Contig Sequence (721 bp)

>U35_30677 721 Hv_44K_v2
CTTGATCTTATCGGTGGTGGCAGTACTCTACAAGCTAGTAGGTGACACAAGTTCTTGCAC
CGGTCAGATCCACCTACAAGATGCTGGACAAGCTGTGGGACGACGTGGTGGCCGGGCCTC
GGCCGGAGACGGGCCTCGACAAGCTCCGCCGGGCCGCCGCCACCCAGCCCCTCGCCATCA
ACACAGCTGCGGGGGAGGCGATGAAGCCGTCGCAGTCGATGCCGACGACCCCGACCACGC
CGGTGACGCCGTCGTCGTCGTCGTCGACGCCGCCGCGCGGCGGCAGCGTGTGGCGGAGCG
TCTTCCACCCCGGGAGCAACCTCGCCACCAAGGGCCTCGGCGCCAACCTCTTCGACCGCC
CCCAGCCCAACTCCCCCACCGTCTACGACTGGTACGTACGCTAGCTCATGATCCATCTCG
CAATATAAAATGGGTTTTTGATAGCACTGTCTACTGGGGCTTGGAACGGGTTAGCAGCAT
GCATGGAAATAATAACGGTGCAACGTACGTGCGTACGTTTGATGTCCAGGCTTTACAGCG
ACGAGACCAGGACCAGGAGCAACCACCGCTAAAGAAGAGGAAGACGGGGGTGCTCGATCG
ACAACTTCGATCTGGGACGACGCCATGTTTGCTGCTCTTTTGGTTATCTAAATCCTGCGT
ACGTACGTTGCTGTCCGAGGCTGCATGTAGTTTCTCCTAAGCTTAGTAGTACTACTATAC
T

Homology of Contig U35_30677 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None