barSeed - Barley Seed Development Database

Probe CUST_32980_PI390587928

Source Contig U35_16384

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32980_PI390587928	Hv_44K_v2	ATGTCCTTGTATATCTATAAGTACACGAGCATCTGGATTCTTCAGAAAGAAGTGTGTGTC	1938	GeneList: mediumpurple3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.750	2.770	1.207	0.756	0.320	0.405
Raw	583.357	895.697	344.580	349.258	49.272	69.776

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_14408.1	2191	8e-25	2101 - 2160	100	60 / 60	plus
Harvest21	ABC05972	2019	3e-25	1939 - 1998	100	60 / 60	plus	ABC05972
Harvest35	U35_16384	2022	3e-25	1939 - 1998	100	60 / 60	plus

Contig Sequence (2022 bp)

>U35_16384 2022 Hv_44K_v2
GATCGGATCCACCCACCTTCCTCGCCCATAACCTCCCTCCCTCCGCCCCGCTGCCGCAGT
CCGCTCTCAGCTCCCAACCGCTTCCCAGTTTGACGCCGCCCCCCTCCTCGGTTGTTCCAC
CAGCTCACTCCCGCCGCCGCTCCCCTCTGTCCGCCCGCCGGCGGAGCTTGCTCTAGGCGT
GTGGGGACTGGGACTCTGAGAGCATGGCAGGGAAGGGGGAGGAGGTGTACGTGGCGTCGA
TCGATCAGGGGACGACCAGCACCAGGTTCATCGTCTACGACCGCCACGCCAGCCCCGTCG
CCTCCCACCAGCTCGAGTTCAAGCAGCACTACCCGGAGGCCGGATGGGTCGAGCATGATC
CTATGGAGATCATGGAGAGTGTGAAGGTCTGCATGGCAAAGACACTCGAAAAAGCTGCAG
CCAGTGGACTTAATGTGGATGCTGGTTTGAAGGCCATTGGAATCACAAATCAGAGGGAGA
CTACCGTTGTGTGGAGCAAATCCACAGGCCTTCCGCTCTACAATGCCATTGTGTGGATGG
ATGTTCGCACTAGCTCTATTTGCAGGAGACTGGAAAGTAAGCTATCAGGTGGTAGAACGC
ACTTTGTGGAGACATGTGGTTTACCAATCAGTACCTACTTCAGTGCTCTGAAGTTATTAT
GGTTGATGGAGAATGTTGACGCTGTCAAGGATGCAGTCAAGGCTGGTGATGCATTATTTG
GCACAATCGATACCTGGTTGATCTGGAACCTAACTGGAGGCATTGGTGGGAAAGACTGTG
ATGGAAAGGAGTTAGTTGGGCGGCATGTCACAGACTGCTCAAACGCATCACGGACAATGC
TTATGAATCTGAAGGCACTTGACTGGGACAAGCCTACACTTGAGGCATTAGGCATTCCTG
CTGGCATCTTGCCAAAGATTGTCAGCAACTCCGAGAAAATTGGTGTTGTTGCCAGTGGGT
TCCCTTTGGCTGGTGTGTCTATCTCAGGGTGTCTAGGAGATCAGCATGCTGCGATGCTTG
GGCAGCTATGCCAGAAAGGTGAAGCAAAAAGCACCTATGGAACTGGTGCCTTCATCCTTC
TCAACACAGGGGAGGAGGTTACTCAGTCCACCCACGGTCTTCTTAGCACCATTGCTTACA
AACTTGGCCCAGATGTGCCAACTAATTATGCTCTAGAAGGGTCAATTGCAATTGCTGGTG
CAGCAGTTCAGTGGTTGAGGGACAGCCTTGGAATCATTTCCTCGGCTGCAGAAATTGAAG
GGTTAGCTGAAAGTGTGCAGGATTCAGGTGGCATATACTTTGTGCCAGCATTCAATGGAT
TGTTCGCGCCATGGTGGAGGGATGATGCTAGGGGGATCTGCATAGGAATCACGAGGTTCA
CCAACAAGGGGCACATTGCTCGAGCAGTGCTCGAGAGTATGTGCTTTCAGGTGAATGATG
TCCTCAGCTCCATGCATAAGGATGCTGGGGAGGCAGGAGAAGTCAAGAGTGCAGAAGGGG
AGTTCTTGCTACGTGTTGATGGTGGTGCTACTGTTAACAACCTTCTCATGCAGATCCAGG
CTGATTTGCTGGGTAGCCCTGTTGTCAGGCCAGCCGACATTGAGACAACGGCCCTCGGGG
CCGCATACGCAGCAGGGTTAGCTGCCGGAGTCTGGACGAAGGAGGAAATATTCGCAGGCC
TGCACAAGGAGAACACAACGGTGTTCCGCCCCAAGTTAGACGATGCACACAGGAAGAAAA
GAGGAGACTCCTGGTACAAGGCGGTTTCGAGATCATTTGACCTGGCTGACCTTTCTCTCT
AGTTTGTTACACATTGCTGCGCCGTAAATTGGACCAGTTTGTGCCAGCCCTTGTTTGTCT
TGTCAACGAATAAACGGTGTGTTGTACATTATTTCGGTGCGATTCTTCTTTGGCTTTATA
GGAAGAACTGGAGCATAAATGTCCTTGTATATCTATAAGTACACGAGCATCTGGATTCTT
CAGAAAGAAGTGTGTGTCGAGTATAAAAAAAAAAAAAAAAAA

Homology of Contig U35_16384 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g55410.1	530	protein\|FGGY family of carbohydrate kinases, putative, expressed
Brachypodium v1_2	Bradi5g23940.1	532
Arabidopsis v10	AT1G80460.1	522	\| Symbols: NHO1, GLI1 \| Actin-like ATPase superfamily protein \| chr1:30246960-30249055 REVERSE LENGTH=522