barSeed - Barley Seed Development Database

Probe CUST_32972_PI390587928

Source Contig U35_42651

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32972_PI390587928	Hv_44K_v2	TGAGACTGGTTTTAGAGAGGTTGCTGCATACCTTCTGGACTATGATAGCTTCGCCAATGT	482	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55934.1	3003	2e-24	1693 - 1752	100	60 / 60	minus	ABC06594
MLOC	MLOC_55934.2	4983	2e-24	1584 - 1643	100	60 / 60	minus	ABC06594
MLOC	MLOC_55934.4	3499	2e-24	2214 - 2273	100	60 / 60	minus	ABC06594 ABC15956
MLOC	MLOC_55934.6	4004	2e-24	1677 - 1736	100	60 / 60	minus	ABC06594
MLOC	MLOC_55934.5	2608	2e-24	1287 - 1346	100	60 / 60	minus	ABC06594
MLOC	MLOC_55934.7	5026	2e-24	1661 - 1720	100	60 / 60	minus	ABC06594
MLOC	MLOC_55934.3	6150	2e-24	3859 - 3918	100	60 / 60	minus	ABC06594 ABC15956
JLOC1	JLOC1_36121.3	4927	8e-25	2237 - 2296	100	60 / 60	plus
JLOC1	JLOC1_36121.2	3299	8e-25	1242 - 1301	100	60 / 60	plus
JLOC1	JLOC1_36121.1	3304	8e-25	1247 - 1306	100	60 / 60	plus
JLOC1	JLOC1_36120.1	7070	8e-25	3702 - 3761	100	60 / 60	minus
Harvest21	ABC38447	542	3e-25	483 - 542	100	60 / 60	plus
Harvest21	ABC06594	2496	3e-25	815 - 874	100	60 / 60	plus	ABC06594
Harvest35	U35_42651	542	3e-25	483 - 542	100	60 / 60	plus
Harvest35	U35_17191	2497	3e-25	815 - 874	100	60 / 60	plus

Contig Sequence (542 bp)

>U35_42651 542 Hv_44K_v2
GGTGACAGTGTACACACAGTCAAAAGAAAGCTGCAGGTGGCCCTCAATGTTCCCACTGAG
GAGAGTTCACTGACACTTGGTGATCATGTCCTCAAGAATGATCTCAGCAGCATCCGAACC
CCGCTGCTCCTGACCAAGACCTTCATGCATCGGAGTTCCTCCAGCCCATGCCTGTCTCCT
ACAAGCAAGGATCTCCAGCAGCAAAGGGATAGGGGTGGTCCGATTGAAGTTTTAGTATGT
CCAAGCCGCTGCTTTCGGGCAAAGCAGCTTGTTAAGGATGTTGCTAGGGGCATAAGAAAC
GGTGTGGATCCAACACTTGTCAATAGTGGGCTTGGTGGTGCCTACTATTTCAAGAACAGT
AAAGGTGAGAATGCTGCCATCGTGAAGCCAAATGATGAGGAGCCGTTTGCACCCAACAAT
CCAAAAGGTTTTACTGGGAGAGCCCTTGGGCAGCCAGGCCTCAAAAGATCAGTTCGAGTT
GGTGAGACTGGTTTTAGAGAGGTTGCTGCATACCTTCTGGACTATGATAGCTTCGCCAAT
GT

Homology of Contig U35_42651 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g17290.1	701	3e-97	protein\|phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
Brachypodium v1_2	Bradi1g43570.1	638	7e-99
Arabidopsis v10	AT1G26270.1	630	1e-71	Phosphatidylinositol 3- and 4-kinase family protein \| chr1:9089822-9091714 REVERSE LENGTH=630