barSeed - Barley Seed Development Database

Probe CUST_3296_PI390587928

Source Contig U35_4145

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3296_PI390587928	Hv_44K_v2	AGGGCTAAATCCATTGATTATATATATACCTACATAATGGCAGGCCCAGCGCACAATTTC	1334	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.722	2.306	1.007	0.989	0.497	0.852
Raw	39.724	53.176	20.814	30.903	5.147	10.418

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61591.2	2816	7e-23	2033 - 2092	98	59 / 60	minus	ABC09679
MLOC	MLOC_61591.1	3414	7e-23	2506 - 2565	98	59 / 60	minus	ABC09679
JLOC1	JLOC1_40251.1	4439	4e-23	1289 - 1348	98	59 / 60	plus
JLOC1	JLOC1_40250.2	4437	4e-23	2838 - 2897	98	59 / 60	minus
JLOC1	JLOC1_40250.1	4161	4e-23	2562 - 2621	98	59 / 60	minus
Harvest21	ABC09679	1413	1e-23	1335 - 1394	98	59 / 60	plus	ABC09679
Harvest35	U35_4145	1415	3e-25	1335 - 1394	100	60 / 60	plus

Contig Sequence (1415 bp)

>U35_4145 1415 Hv_44K_v2
GCGCAGACGGAGCTGCTCACCAGNACCCCCGCGCAGAGCCGGACCACCATCGTCTACAAG
TTCGCCACCGACGACATCCTCCGCGAGCAGTACCGCGACCCCTGGAACGAGGTGCGCATC
GGCAAGCTGCTCGAGGACCTCGACGCCCTCGCCGGCACCATCGCCGTCAAGCACTGTTCA
GATGACGATAGCACAACAAGACCCCTTTTGTTAGTTACTGCTTCTGTGGATAAGATGGTC
TTAATGAAGCCACTTCGTCTGGACACTGAAGTAAAGATTGTTGGGGCAGTTACTTACGTT
GGCCGCTCTTCGATTGATATACAGATTGAAGTGACTCAGATTGATCAAGATGGTGATACA
CAGTCAGACCCAATTGCATTGACGGCTAACTTCACATTTGTTGCACGAGATTCAGTGACC
GGAAAATCCGCTCCAGTGAACCGCCTTTCACCAGAAACCGAGAGAGAGAAGCAGTTATAT
GAAGAGACAGAAGCACTGGATAAGGTGAAAAAAAGGAAAAGAGAAGAACAGAAGGGAGTG
CTTGAAAAGGGGGTACATAAGCTTGGTGCTGAGGCTGAGAGGCTGAAGGCTTTACTGGCA
GAGGGTCGTGTTTTCTCTGATTTTCCTGCTTTGGCTGATAGGGATAGCATATTGATGAAG
GATACTCGCCTGGAGAACTCCCTTATCTGCCAACCTCAACAGCGGAACTTGTATGGACGG
ATATTTGGAGGTTTCTTGATGCACCGAGCATTTGAGCTTGCTTTCTCGACTGCCTATGCC
TTTGTTGGGCAGAGACCGTGTTTTCTTGAGGTGGACCATGTCGACTTCTTAAAGCCGGTG
GATGTTGGAGACTTTCTTCGATTCAAATCATGTGTCTTGTTTACCCAGCTTGAGAATAAA
TGGCAGCCCCTGGTAAATGTCGAAGTTGTCGCTCATGTGACAAGGCCTGAGCTCCGAAAA
AGCGAGATCTCCAACACATTCCACTTCACCTTCTCAGTCGGCAGCGACGCGCTGAAGAAC
GGACTGAACATCCGCAATGTTGTTCCCTCAACCGAAGAAGAGGCACGCCGTATATTAAAC
CGCATGGATGCGGAGGGTTTGTTCGACTGATCCTTCGGCAGAGTCACTGGTTCCAGCCAC
AGTTTTAGCAACTTTTTACTAGCCACATTAACTAGTGGGAGATGTACCCCATGATTTGAA
CATCAGCCGCGTATGCTGGCAACCAGACCGGCAGAAGTGTAGCTTTTGGCGTTTCTTTTG
GGAAATTATTTGGAGCACATACAGTAGGATACAATAACCCCACAACCTCGAGACCCGAAA
ATTTGCTTTTTGTGAGGGCTAAATCCATTGATTATATATATACCTACATAATGGCAGGCC
CAGCGCACAATTTCTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_4145 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g34190.1	503	0.0	protein\|acyl-coenzyme A thioesterase 10, mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi4g35336.1	501	0.0
Arabidopsis v10	AT5G48370.1	438	2e-165	Thioesterase/thiol ester dehydrase-isomerase superfamily protein \| chr5:19598666-19600512 REVERSE LENGTH=438