barSeed - Barley Seed Development Database

Probe CUST_32969_PI390587928

Source Contig U35_42654

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32969_PI390587928	Hv_44K_v2	TTGTGTTGCTCGTATGACAATGGAGGCTGTCTACCATTATTTTGAAATACAGGGAAAAAA	38	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.112	2.322	1.226	0.738	0.257	0.287
Raw	7688.670	13230.590	6070.907	5846.100	704.915	848.319

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59220.2	2114	2e-24	1752 - 1811	100	60 / 60	plus	ABC14897 ABC38453
MLOC	MLOC_59220.1	1866	2e-24	1625 - 1684	100	60 / 60	plus	ABC14897 ABC38453
MLOC	MLOC_59220.3	1908	2e-24	1546 - 1605	100	60 / 60	plus	ABC14897 ABC38453
JLOC1	JLOC1_38525.1	1951	8e-25	1608 - 1667	100	60 / 60	plus
Harvest21	ABC38453	542	3e-25	39 - 98	100	60 / 60	minus	ABC38453
Harvest35	U35_42654	542	3e-25	39 - 98	100	60 / 60	minus

Contig Sequence (542 bp)

>U35_42654 542 Hv_44K_v2
TTTTTTTTTTTTTTTTTGACAGCATTGACTACCTCTCTTTTTTTCCCTGTATTTCAAAAT
AATGGTAGACAGCCTCCATTGTCATACGAGCAACACAAATATTCCTCCAATTTTTTTTCC
CAACGCATAGGCATCCTTTGGCGCACACCAGCAAAACTGTGCCACAGGAGAAAAGCACAA
GGTTCTGTTTTACGGCATATTAACTAGGACGACGACCTTTTCCACGGAAAGTTCAAGTAT
GTATCCCAGATTAAGCTAACCAAAAGTTCTGCCGGGGCGGAGAAAACTATGGATCAATCC
TTCTCTTCGCCGTTCTCATCTTCGTTCTCCTCCGATTTTCCTTAAGGTTGGAACATCCTG
GCGTATGCCTTGCGCTCCTTATCTCTCCTGTTGGAGATCTTCTTCTTTGCAGCAGCCAGC
TCGCGTTTAATCGCTCCATCAGTTGGCTCCAAGTCCAATGCATGCTGGAAGCTCTCCACC
GCTGCATCAATGTCATTAAGTGCTATGTGTGCCTGTCCTTGTCGGAAAAAGCCTTAGCAT
TG

Homology of Contig U35_42654 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None