barSeed - Barley Seed Development Database

Probe CUST_32964_PI390587928

Source Contig U35_28365

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32964_PI390587928	Hv_44K_v2	GCCTTCGTGTCAAATGATATTTATCCAGCATGAATCATGATGAATTCTTCCATTTGATGT	485	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_188.2	1731	2e-24	756 - 815	100	60 / 60	minus	ABC06182
MLOC	MLOC_188.4	864	2e-24	606 - 665	100	60 / 60	minus	ABC06182
Harvest21	ABC27191	709	3e-25	486 - 545	100	60 / 60	plus
Harvest35	U35_28365	709	3e-25	486 - 545	100	60 / 60	plus

Contig Sequence (709 bp)

>U35_28365 709 Hv_44K_v2
GCTTGGATTCAGGCTTCTTCTATGTGCTGGATCATGGGATAAGCCAGGAATTCATGGATG
AGGTTTTTGCCGAAAGCAAGAAGTTCTTTGAACTTCCGAACAGTGAGAAAATGAAGCTTC
TCCGAAATGAGAAGAATCGAGGGTATACACCTATGCTAGATGAGATTCTTGATCCAGAAA
ACCAAGTGAATGGTGACTACAAGGAAGGGTATTATATTGGTGTTGAGGTACCTACAGATG
ACCCACAATCAAATAGGCCATTTTATGGTCCAAACCAGTGGCCTTCTGAAGAAGTATTGC
CCAAATGGAGGGAGGTGATGGAGCAATATCACAGGGAAGCATTGAGAGTGGCCAAATCAG
TTGCAAGGATCATTGCTCTTGCTTTGAACCTAGATGCAGATTTCTTTGATAGACCTGAAA
TGCTTGGCGATTCCATAGCCACATTAAGGCTCCTGCACTATGAAGGTGGACAAAAAACAG
GTCATGCCTTCGTGTCAAATGATATTTATCCAGCATGAATCATGATGAATTCTTCCATTT
GATGTTCTTTTTGTCATCAGGTCAAGTGTCAAATCCTTCTAAGGGAGTTTATGGAGCCGG
TGCACATTCGGATTATGGCCTGATCACTCTCTTAGCAACTGATGATGTAGTTGGTCTCCA
AATATGCAAGGACAGGAATGCTCAGCCTCAAGTATGGGAATATGTAGCT

Homology of Contig U35_28365 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g09300.1	362	2e-111	protein\|oxidoreductase, putative, expressed
Brachypodium v1_2	Bradi2g05600.1	335	6e-111
Arabidopsis v10	AT1G35190.1	329	5e-82	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein \| chr1:12890544-12892632 FORWARD LENGTH=329