barSeed - Barley Seed Development Database

Probe CUST_32962_PI390587928

Source Contig U35_28367

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32962_PI390587928	Hv_44K_v2	ATTGAGCGCAAGGGACTTGATATGGTCAGGCGTGATTGGAGTTTGCTGTCTAAAGAAATT	551	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15360.1	2293	2e-24	830 - 889	100	60 / 60	plus	ABC12726
JLOC1	JLOC1_10535.1	2053	8e-25	471 - 530	100	60 / 60	plus
Harvest21	ABC27196	668	3e-25	552 - 611	100	60 / 60	plus
Harvest35	U35_28367	668	3e-25	552 - 611	100	60 / 60	plus

Contig Sequence (668 bp)

>U35_28367 668 Hv_44K_v2
CATATCTGCTTCACCACTGTTGAGCGTTCTTCTGATGGCAATCTTCCTAACCTGCCAACT
TCAAAGCTACTGGTGTTTTGCCTGAGTTGCTGAAGAGTTTGGTGGAGAGGAGAAGAATGG
TTAAATCATGGCTCAAAACTGCCTCTGGTCTCAAAAGGCAGCAGTTTGATATTCAACAGC
AAGCTTTGAAGCTTACTGCAAATAGTATGTATGGTTGCTTGGGCTTTTCTAATTCTAGGT
TTTTTGCAAAGCCGCTTGCTGAGCTTATTACCCTACAAGGTAGAGAGATCTTGCAAAACA
CTGTTGATCTGGTTCAGAATAATTTAAACCTGGAGGTTATTTATGGCGACACTGACTCCA
TAATGATATATACTGGACTGGATGACATCTCCAAGGCAAAAGCAATTGCTGGAAAGGTCA
TTCAGGAGGTGAACAAGAAGTACCGTTGTCTGGAGATTGATCTTGATGGTGTATACAAAA
GAATGTTGCTTCTCAAAAAGAAGAAGTATGCTGCCATTAAAGTGACACTAGATGGTAGTT
TAAGAGAGAACATTGAGCGCAAGGGACTTGATATGGTCAGGCGTGATTGGAGTTTGCTGT
CTAAAGAAATTGGTGATTNTTGCCTGAATCAAATTCTGTCTGGAGGGACATGTGATGATG
TTATTGAG

Homology of Contig U35_28367 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g64820.1	1535	8e-117	protein\|POLA1 - Putative DNA polymerase alpha catalytic subunit, expressed
Brachypodium v1_2	Bradi2g56160.1	1442	7e-119
Arabidopsis v10	AT5G67100.1	1524	1e-86	\| Symbols: ICU2 \| DNA-directed DNA polymerases \| chr5:26776994-26785104 FORWARD LENGTH=1524